Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06146 ATGGATTTGGACCAGTGGATCTCGAAGGTGAAGGAAGGCCAGCACCTTCTTGAAGACGAGCTTCAACTTCTTTGCGAATATGTTAAAGAGATTCTTATTGAGGAGTCCAATGTGCAGCCTGTCAATAGTCCAGTAACTGTTTGTGGTGATATTCATGGTCAATTTCATGATCTAATGAAACTTTTTCAGACTGGGGGTCATGTGCCAGAGACAAATTACATTTTTATGGGAGATTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTTTTGCTTCTAAAAGCTAGATACCCAGCTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACACAGGTCTATGGATTTTATGATGAATGCCAGAGAAAGTATGGAAATGCTAATGCTTGGCGATATTGTACAGATGTTTTCGACTATCTTACACTTTCTGCAATTATAGATGGAACTGTGCTTTGTGTTCATGGTGGCCTTTCTCCGGACATTCGAACAATTGATCAGATAAGGGTCATCGAGCGAAACTGTGAAATTCCTCATGAGGGGCCATTTTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCTCGTGGAGCAGGTTGGCTTTTCGGATCCCGGGTCACATCGGAGTTCAATCACATAAACAATCTTGATCTTGTTTGTCGAGCACATCAACTTGTTCAAGAAGGACTTAAGTATATGTTCCAAGATAAAGGTCTTGTAACTGTGTGGTCTGCACCTAATTACTGTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGTTGGATAGTGAGAGGGAGATCATTAAGGAAGAAAAAAAGAGAGTATGGTGA 879 0.4016 MDLDQWISKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMLDSEREIIKEEKKRVW. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06146 292 ProSitePatterns Serine/threonine specific protein phosphatases signature. 107 112 IPR006186 GO:0016787
Seca9g06146 292 CDD MPP_PP2A_PP4_PP6 2 276 - -
Seca9g06146 292 Gene3D - 1 291 IPR029052 -
Seca9g06146 292 Pfam Calcineurin-like phosphoesterase 44 235 IPR004843 GO:0016787
Seca9g06146 292 PRINTS Serine/threonine phosphatase family signature 170 197 IPR006186 GO:0016787
Seca9g06146 292 PRINTS Serine/threonine phosphatase family signature 141 167 IPR006186 GO:0016787
Seca9g06146 292 PRINTS Serine/threonine phosphatase family signature 249 265 IPR006186 GO:0016787
Seca9g06146 292 PRINTS Serine/threonine phosphatase family signature 73 100 IPR006186 GO:0016787
Seca9g06146 292 PRINTS Serine/threonine phosphatase family signature 106 130 IPR006186 GO:0016787
Seca9g06146 292 PRINTS Serine/threonine phosphatase family signature 226 246 IPR006186 GO:0016787
Seca9g06146 292 PRINTS Serine/threonine phosphatase family signature 44 71 IPR006186 GO:0016787
Seca9g06146 292 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 2 278 IPR047129 GO:0004722
Seca9g06146 292 FunFam Serine/threonine-protein phosphatase 1 291 - -
Seca9g06146 292 SMART pp2a_7 16 288 IPR006186 GO:0016787
Seca9g06146 292 SUPERFAMILY Metallo-dependent phosphatases 2 277 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06146 Seca-Chr9 176700625 176711360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06146 43 221 Calmodulin-binding Proteins AT5G63870 37.500 1.48e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06146 K15498 - pvy:116128297 583.178