Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06127 ATGGAGAATAATATGGAGGGTGAGCACTGGTGTAACATATGCTCTAAAATGGTGAACCCATTGACTGAAGCTGAGAACAAATGTCCATTCTGTGAGACAGAATTTGCTGAGGTAGTTGACAATCTAAGGGACCAGAATGATGCTATTGATTTAAGGTCAGCATGGGTGTTCTCACTTTATGCCCCAATCTTTCTTGGCTTGTTGGGTGCTTTTAGCCCTTCTATAGCAAGCATTGCTTCACAAGAAAGTAGCAGCAGCTCAAGAAGGGAAGAAGGGGTTGAACAAGAGAGGGACAATGAGAATGAAAATGAACTTGTTCTTGGAAGAAGGAGAAGAAATTCAACTTATATGATGCATCTCTTTCGCGGTCTTCATGTTAGGATGCTGTCTGAATCTGAGAACACAGAAGAAAATAGGAACATAGATAGCAGTATACTTGTTATTGATCCATTCAATGAAGGGGCATTGGTTGTCCGTGGTCCTAACTTGAACCACACAAGTAATCCAAATGAGAATTCTCTTGGCTCCTTAAATGACTTTGTGGTTGGATCTGGCTTTGATTTGTTGTTACAGCATTTGGCACAGATTGGCCCTAGTGGATATGCAAGTGTGAATCCTCCAGCACAGAAGGCAGCAATTGAAGCTATGCCTAGTGTGACTAATGAGGAAAATTTACAATGCACAATATGTTTGGAGGATCTTGAGATTGGTAGTGAAGCTAAGGAGATGCCATGTAAGCATAAATTCCACAATGGTTGCATTGTCTCATGGCTAAAGCTCCATAGTTCTTGTCCAGTTTGCAGGTTTCAGATGCCATATGAGGATTCAACTGTTGAAGCTGATCTAGGAATTGGAAATGGGGACAATCAAAACAATGAGCTAGTCAGAGCTAGAGAAGAGAGGACTAGGAATGGAAGGAGGAACTGGTTTCCAGTGCTGCAATCATTCAATAATTTTCTTCCTTCTCCTTAA 972 0.4126 MENNMEGEHWCNICSKMVNPLTEAENKCPFCETEFAEVVDNLRDQNDAIDLRSAWVFSLYAPIFLGLLGAFSPSIASIASQESSSSSRREEGVEQERDNENENELVLGRRRRNSTYMMHLFRGLHVRMLSESENTEENRNIDSSILVIDPFNEGALVVRGPNLNHTSNPNENSLGSLNDFVVGSGFDLLLQHLAQIGPSGYASVNPPAQKAAIEAMPSVTNEENLQCTICLEDLEIGSEAKEMPCKHKFHNGCIVSWLKLHSSCPVCRFQMPYEDSTVEADLGIGNGDNQNNELVRAREERTRNGRRNWFPVLQSFNNFLPSP. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06127 323 MobiDBLite consensus disorder prediction 87 108 - -
Seca9g06127 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 95 272 - -
Seca9g06127 323 Pfam Ring finger domain 226 268 IPR001841 -
Seca9g06127 323 SMART ring_2 227 267 IPR001841 -
Seca9g06127 323 SUPERFAMILY RING/U-box 215 274 - -
Seca9g06127 323 MobiDBLite consensus disorder prediction 79 108 - -
Seca9g06127 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 274 IPR013083 -
Seca9g06127 323 ProSiteProfiles Zinc finger RING-type profile. 227 268 IPR001841 -
Seca9g06127 323 FunFam E3 ubiquitin-protein ligase RNF181 198 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06127 Seca-Chr9 176179603 176180574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06127 93 294 C3H Transcription Factor Family AT1G26800 33.981 1.58e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06127 - K11982 gmx:100790855 511.531