LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g06125	ATGTACTTTCATCAGCAGCAGCAGCAACTAGCTAAGAACATCCACGCTTTAAGGATGCAAGGAGGAGGCAATGGAGCTGGAGATTCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTAAAGTGGACACCAGATCTTCATGAAAGGTTCATAGAAGCAGTCAATCAACTTGGAGGAGCAGATAAAGCTACACCAAAAACAGTCTTGAAAATTATGGGGATCCCTGGACTTACTCTATACCACTTAAAGAGTCACCTACAGCAGAAATACAGGATCAGTAAAAATATGCATGGACAAACCAATACTGGCAACAACAAAATAGCATCAACCACAGAAGCACCAGGCAAAATGTCAGAAGCAAGTGGAATCCAAATGAAACATTTAAGCATAGGACTCCAGACAAACAATTTTCCCTGGTGGGAGGCAACACTAACAAGGGTCACCCCTCAATACAGAAATTCAGAAATAAATGAGGCCTTAGAGATGCAAATTGAAGTTCAAAGAAGACTACATGAGCAGCTTGAGGTACAGCGACACTTACAGCTTAGGATAGAGGCTCAAGGAAAGTACCTTCAGACAGTGCTGGAAAAAGCTAGGGAGACACTAGGAAGACAAAATTTAGGTACTGTGGGACTTGATGCTGCAAAGGTTCAACTGTCTGAACTGGCATCCAGAGTATCCACTCAATGCCTTGATTCTAAATTTTCAGAACTGAAAGAATTGCAGGTACTGTGGCCTCAGCAAACACAAGAAGGCAAAGCCATTGATTGTTCAATGGGCAGTTTCTTAACCTACAGTGAGGAATCTGAAAGAGACCAAGAAACACATAACAAGGGCTTGAATTTGAGAGCCTACAATGGCACTCCATTTTTAGCTTCAAAAGAGTGTGTGGAAGAGTCTATGCTTTTGAAGTCTGATCTCTCATTGTGTGAAGAAATGAAGGAGAATAATATGATGTTTCTTTCCTCATTAAATGATGAAGTACTAAAGGGGAAGTTTTTACCAGAAAGGACCTCAAGCCTCTTATCCATGAATGTGGGAGTTCAAGAAGAAAAATTTGGAAGAAAAACTGTTTCAAAGGAAGATTTAAAAGGTGAGGGTTGGAAGAGAAGAGATGGTAGTGAAACTAGTCGAGTGCCAGTTAAACTGAACCATGACAAAGTTTCTCAAGATTATAGACTGGCTAACCTTGAAGTGAAACTGGACCTAAATTCCCATGGTGATAATGATGCTTCTTCCCAATACCAAAGGTTTGACTTGAATGGTTTCAGCTGGAATTGCTAG	1287	0.4087	MYFHQQQQQLAKNIHALRMQGGGNGAGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKIMGIPGLTLYHLKSHLQQKYRISKNMHGQTNTGNNKIASTTEAPGKMSEASGIQMKHLSIGLQTNNFPWWEATLTRVTPQYRNSEINEALEMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQTVLEKARETLGRQNLGTVGLDAAKVQLSELASRVSTQCLDSKFSELKELQVLWPQQTQEGKAIDCSMGSFLTYSEESERDQETHNKGLNLRAYNGTPFLASKECVEESMLLKSDLSLCEEMKENNMMFLSSLNDEVLKGKFLPERTSSLLSMNVGVQEEKFGRKTVSKEDLKGEGWKRRDGSETSRVPVKLNHDKVSQDYRLANLEVKLDLNSHGDNDASSQYQRFDLNGFSWNC.	429

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g06125	428	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	38	94	IPR006447	GO:0003677
	Seca9g06125	428	Coils	Coil	158	178	-	-
	Seca9g06125	428	Pfam	Myb-like DNA-binding domain	40	89	IPR001005	-
	Seca9g06125	428	SUPERFAMILY	Homeodomain-like	37	93	IPR009057	-
	Seca9g06125	428	FunFam	Myb family transcription factor	37	96	-	-
	Seca9g06125	428	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	35	95	IPR017930	-
	Seca9g06125	428	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	6	274	IPR044848	GO:0003700
	Seca9g06125	428	Pfam	MYB-CC type transfactor, LHEQLE motif	156	201	IPR025756	-
	Seca9g06125	428	Gene3D	-	37	96	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g06125	Seca-Chr9	176151955	176155303	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g06125	70	427	G2-like Transcription Factor Family	AT3G04030	46.518	3.69e-87	266

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Seca9g06125		Myb_DNA-binding	2.9e-07	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g06125	-		-	gmx:100789797	630.172