Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06121 ATGGAAGAAGCCGTTGTGGTGAATAAAGGAGATGAAGCTCTAGATTTGCCTCCAGGTTTCAGGTTCCATCCTACTGATGAGGAAATCATCACTTGTTATCTAACAGAGAAGGTGTTGAATAGCAATTTCAGTGCAATTGCTATTGGAGAAGCTGATCTAAACAAGTGTGAGCCTTGGGACTTACCCAAGATAGCCAAGATGGGTGAGAAAGATTGGTACTTTTTCTATCAAAGAGATAGAAAGTATCCAACTGGTACGAGAACCAATAGAGCAACTCAATCTGGGTATTGGAAAGCCACTGGAAAAGATAAAGAAATTTACAAAGGGAAAACCAATATCTTAGTGGGGATGAAGAAGACTCTTGTGTTTTACAAAGGAAGAGCTCCAAAAGGTGAAAAAACCAACTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTCTCAGGTCACAATCTTCCTAAGGCTGCAAAGGATGAATGGGTTGTCTCCAAGGTTTTCCATAAGAACACAGATCTTAAAAAGATCCCAATTTCAGGTATTTTGAGGATAAACTCAATAGGAAATAATGATCTATTGGATTTTTCTTCAATCCCTCCTCTTGTGGATCATACTCATCCTTATGGTGACTACACCACCAACAAACCTTCAAGTTACAACAACATTGTGGATGACTTCAAGGAGTCTAACATTATAACACAATCAGCACCATCATCATCACTTAAATCACAATCAAACGGCTATTATTCTCCCTTCATCAACAACAATCAGCAACATCAGATGATGATAAAGCCAGGGAATCACACAAGCTATCATCAGATTCCCAACTATGTCACTGTCACCAACCAACAAGGGAATTTCAGTAATCCAATAATGGGAAGCACATCCTTGAACTTGCTCAATAATAGTGATGTTTATGGATTATTGAACAAAGAGTGCAAGATGGAGCCATTGTCTACTAATCAGTCATTGGTGAGTGTGTCACAGGACACTTGTCTGAGCAATGACATAAACACTGACACATCCTCTGTGGTTTCAAAGCAAGACAACATGATAATGCAAAGGAATAAAGCATTGTATGAGGATTTTGAGGTTCCTTCTTCAGTTGCCCCTCTTTCAGATTTGGGATACCTCTGGGATGACTGTTGA 1146 0.3927 MEEAVVVNKGDEALDLPPGFRFHPTDEEIITCYLTEKVLNSNFSAIAIGEADLNKCEPWDLPKIAKMGEKDWYFFYQRDRKYPTGTRTNRATQSGYWKATGKDKEIYKGKTNILVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFSGHNLPKAAKDEWVVSKVFHKNTDLKKIPISGILRINSIGNNDLLDFSSIPPLVDHTHPYGDYTTNKPSSYNNIVDDFKESNIITQSAPSSSLKSQSNGYYSPFINNNQQHQMMIKPGNHTSYHQIPNYVTVTNQQGNFSNPIMGSTSLNLLNNSDVYGLLNKECKMEPLSTNQSLVSVSQDTCLSNDINTDTSSVVSKQDNMIMQRNKALYEDFEVPSSVAPLSDLGYLWDDC. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06121 381 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 271 - -
Seca9g06121 381 FunFam NAC domain-containing protein 100-like 25 172 - -
Seca9g06121 381 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Seca9g06121 381 SUPERFAMILY NAC domain 12 169 IPR036093 GO:0003677|GO:0006355
Seca9g06121 381 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Seca9g06121 381 Gene3D NAC domain 25 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06121 Seca-Chr9 176087953 176090060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06121 1 379 NAC Transcription Factor Family AT5G18270 51.546 1.56e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca9g06121 NAM 1.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06121 - - aprc:113861501 469.544