Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06120 ATGGGAACCCCACAATCCAATAACTTGCCACCAGGATTTAGGTTCCACCCAACTGATGAAGAGCTCATTCTTCACTACCTTAGGAAGAAAGTGGCATTCATACCCTTGCCAGTTTCCATCATTGCAGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGCCAAGGCTGCGTTTGGGGAGAAAGAATGGTACTTTTTTAGTCCTAGAGACCGCAAGTACCCAAATGGAGCGAGGCCAAACAGGGCAGCAGCTTCAGGGTATTGGAAGGCCACAGGAACAGATAAGAGTATAGTGGCATCATGGGCAGGAGGAAGAGTGAAAGAGATCTTTGGTGTGAAGAAGTCTTTGGTGTTTTACAAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTATAGATTACAACAAACCCATTAAGCTCAAAGACACCTCCATGAGGTTGGATGAATGGGTTCTGTGCAGGATATACAAGAAGTCCAAACACACTCTATCTTCAACCACAGAGGAAGCAGCATCAGTGCTAGTGAATGATCATGAGCAAGATCAAGCAGAAGAACAACAATTGGAAGACACCCTTTTACCAATTAAGAGTCCTTTCTCTCCCCTTCCTCCTTCTCATCAGACCACACTCATATCTCAGAAATCTCTATCCTTCTCCAACCTCTTGGATGCCACAGATTACTCCATGCTAAGCACCTTCTTATCATCTGAGAACCATTCTCCAACTGCACCCTTCAATTCAGGGAATCTTAATCAGGAATACCCCCAAAACTACACCACCAATAGCTGCTTGTTTCAGAGGAATTCTCAATCAAACCATTCAGTTTCCTACATGGAAAACATCAGGCCCAAACGCCAGCTATCAAATATAGATGATGAGGACATGCTGCTATACCCATCAAAGAAATACCTTATTAGCTCCTCTTGCAATTTCCCTAACACCAACAATGTCCAAGATGAGAACCCACAATGGAACTTCCTCTTCAAACATTCATCCATGAACCAATTACATAATTAA 1044 0.4349 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVAFIPLPVSIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKSIVASWAGGRVKEIFGVKKSLVFYKGRPPKGVKTNWIMHEYRLIDYNKPIKLKDTSMRLDEWVLCRIYKKSKHTLSSTTEEAASVLVNDHEQDQAEEQQLEDTLLPIKSPFSPLPPSHQTTLISQKSLSFSNLLDATDYSMLSTFLSSENHSPTAPFNSGNLNQEYPQNYTTNSCLFQRNSQSNHSVSYMENIRPKRQLSNIDDEDMLLYPSKKYLISSSCNFPNTNNVQDENPQWNFLFKHSSMNQLHN. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06120 347 Pfam No apical meristem (NAM) protein 10 140 IPR003441 GO:0003677|GO:0006355
Seca9g06120 347 Gene3D NAC domain 18 172 IPR036093 GO:0003677|GO:0006355
Seca9g06120 347 ProSiteProfiles NAC domain profile. 9 167 IPR003441 GO:0003677|GO:0006355
Seca9g06120 347 SUPERFAMILY NAC domain 6 167 IPR036093 GO:0003677|GO:0006355
Seca9g06120 347 FunFam NAC transcription factor 56 18 172 - -
Seca9g06120 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06120 Seca-Chr9 176049969 176052398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06120 9 319 NAC Transcription Factor Family AT3G04070 53.774 2.65e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca9g06120 NAM 8.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06120 - - gmx:100806421 481.87