LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g06115	ATGAACGACCTAATGACCAAATCATTCACCAGCTACGTGGATCTGAAGAAAGCTGCTATGAAAGACCAAGAAGCAGATTTAGAAGCTGGTACTATTCCTCCACTTTCCGATGTGGAACTTACCTCTTCCACCACCCAATTGGACACTGACATGGGTCTCTTCTTGGAAGAAGCAGAGAAAGTGAGAACCGAAATGGGTCATCTTCGTGACATTCTCCAAAATCTCCAACAAGCCAACGAAGAAAGCAAGTCCCTTCACAAGCCCGAAGCTTTGAAATCACTCAGAAACAGAATCAACTCAGACATCATCACTGTTCTTAAGAAGGCAAGGTCCATAAGGACCCAGCTTGAAGAAATGGATCGTGCTAATGCAGCAAATAGGAGACTCTCTGGTCTCAAAGATGGCACCCCAGCAATTTACAGAACCAGAATTGCAGTCACCAATGGTCTGAGAAAGAAGCTGAAGGAACTGATGATGGAGTTTCAGGGGCTGAGACAGAGGATGATGAGTGAGTACAGAGAAACTGTTGGCAGAAGGTATTTCACTGTGACTGGTGAATACCCAGGTGAGGAAGTGATTGAGAAGATAATTTCCAATGGGGATGATGAAGGGTTTTTGGGGAAAGCCATAAAGGAACATGGAAGAGGGAAGGTTCTGGAAACTGTGGTGGAGATACAGGATAGGCATGATACTGCTAAGGAAGTTGAGAAGAGCTTGTTGGAGTTGCATCAAGTGTTTTTGGATATGGCTGTGATGGTGGAAGCACAAGGTGAGAAAATGGATGATATTGAGCATCATGTGATTCATGCTTCTCACTATGTTAAAGATGGAACAAAGAACCTTCAGACTGCAAAGAAATACCAGAGGAGCAGTAGGAAGTGGATGTGCATTGGGATCATACTTCTATTGATTTTGATTCTTGTCATTGTCATCCCAATTGCCACCAGTTTCAGCAGTTCTTGA	963	0.4372	MNDLMTKSFTSYVDLKKAAMKDQEADLEAGTIPPLSDVELTSSTTQLDTDMGLFLEEAEKVRTEMGHLRDILQNLQQANEESKSLHKPEALKSLRNRINSDIITVLKKARSIRTQLEEMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYRETVGRRYFTVTGEYPGEEVIEKIISNGDDEGFLGKAIKEHGRGKVLETVVEIQDRHDTAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVIHASHYVKDGTKNLQTAKKYQRSSRKWMCIGIILLLILILVIVIPIATSFSSS.	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g06115	320	Gene3D	-	218	318	-	-
	Seca9g06115	320	CDD	SynN	51	198	IPR006011	GO:0016020
	Seca9g06115	320	SMART	tSNARE_6	217	284	IPR000727	-
	Seca9g06115	320	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	222	284	IPR000727	-
	Seca9g06115	320	FunFam	Syntaxin 132	215	315	-	-
	Seca9g06115	320	Pfam	Syntaxin	54	257	IPR006011	GO:0016020
	Seca9g06115	320	ProSitePatterns	Syntaxin / epimorphin family signature.	228	268	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Seca9g06115	320	SUPERFAMILY	t-snare proteins	49	277	IPR010989	GO:0016020\|GO:0016192
	Seca9g06115	320	CDD	SNARE_syntaxin1-like	221	283	-	-
	Seca9g06115	320	FunFam	Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group	48	179	-	-
	Seca9g06115	320	Coils	Coil	147	167	-	-
	Seca9g06115	320	Gene3D	-	51	179	-	-
	Seca9g06115	320	PANTHER	SYNTAXIN	63	306	IPR045242	-
	Seca9g06115	320	Pfam	SNARE domain	259	310	IPR000727	-
	Seca9g06115	320	SMART	SynN_4	46	173	IPR006011	GO:0016020
	Seca9g06115	320	Coils	Coil	58	78	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g06115	Seca-Chr9	176007322	176008284	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g06115	1	320	SNARE and Associated Proteins	AT1G08560	66.149	6.54e-138	391

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g06115	K08486		-	gmx:100816016	518.464