LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g06111	ATGGCTTCCCTTTATCTCTCCCTCTATTCGCTCCTTGTTGCCTTTTGCTTTGCCTCTTTAGCTTGTGGAGCAACTTTGTCAAAAGATGAAGTGCAAGGTCTGAAGGAGATAGCTAAGACAATAGGGAAGAAGGATTGGGATTTCAGTGTAGATCCATGTAGTGGTGAAGGTAACTGGATATCAACAGTTGAAGGGTCGACAGAGAAAAATGCAAATAATGTTACCTGTGATTGCTCCTTTGTCAATGGCACCATCTGCCATGTCACTAACATCCTTTTGAAAGGACTAGATCTTGTGGGCACTCTCCCGCCAGAACTGGTCAAGTTGCCTTACCTACAAGAAATAGACTTTACTCGCAATTATCTAAACGGCACAATTCCTAAGGAATGGGGCTCCATGAATCTTATCATAATTGGACTAAACGGGAATAGACTATCGGGTTCAATCCCAATAGAGCTAGCAAACATTACCACTCTCCAAAGTTTTACTGTGGAGTTCAATCAACTCTCAGGAAATCTTCCTCATGAGCTTGGGAATCTTCCCAACATTCAAAGACTGTTTCTTACCTCCAACAATTTTACTGGAGAATTACCTGCATCATTTGCCAAGCTCACTACCTTGCAAGATGTTCGAATTGGGGACAATAATTTCTCTGGAAAGATACCTGATTTTATTCAAATTTGGACGAGTCTCAACAAACTAGTGATTCAAGGAACAGGACTAAGTGGGCCAATTCCTTCTGGAATTTCACTTCTAGGAAATTTAACTGATTTGAGAATTAGTGATCTAAAAGGATCTGAATATTGGCCTTTTCCACCACTCAACAATTTGAAAAATTTGAAAATTCTGATTCTAAGGAGTTGCAACATTAATGGAACAATACCTGAATATCTTGGGACAATAACGACTTTAAAAACCTTAGATCTCAGCTTTAACAAATTGAGTGGACCAATTCCAAAAAGCTTCGAAGTGGGCCTAAGAAAAACAGATTATATATATTTAACGGGAAACTTTCTCAGTGGATCAGTCCCTGCATGGATACAAAAAGTAAAAAATATGGATCTTTCATACAATAACTTCAGCATTGGAAGCTCAGGGCAACCATCATGTCAACAGGGAAATGTGAACGTGTTTGCAAGCTCTTCAATGGGAAATAATACATGCTTAATATATTTTGCTCACTCTACTCTGCTTGTCCCAGTTTCATACTCTCTTCATATTAATTGTGGTGGAAAACAAGTAACAATCAATGGAAGTGAAACATATGATGCTGATACAGATATAGCAGGACCATCTAGATTCCACCTTGGTGGAACTAACTGGGCATTTAGCAGCACTGGTCACTTCTTGGATAATGATCGTGGAGACTATTATGTTTGGCAAAACCAATCTAGGCTTTCCATGACTGATGCTGAATTATACATGGATGCACGTGTTTCTCCTATTTCTCTGACTTATTATGGATTTTGCTTGGGAAATGGAAACTACACAGTAAATCTACACTTTGCAGAGGTAATGTTCATTGATGGTCAAACATACAAGAGCCTAGGAAGACGTGTATTTGATGTCTACATTCAGGGGAATTTGGTGTTGAAGGATTTCGATATTGCAGAAGAAGTAGGGGGAGTTAATAAAGCAGTCACAAAATCATTCAGTGTTGTTATTAGTAGTAACACATTGGATATTCGATTATATTGGGATGGAAAAGGGACAATTGGTATTCCATTTAAAGCGGTATATGGTCCTCTTATATCAGCTATATCTGTGAATCCCGATTTCACACCTCCCTCAGAAAATGGAAGTAGCTTGTCTACAGGGGCTGTAGCTGGAATTGTGGCTACTATTGTAGTAGTCATTTTCATCCTCATGTTTGGTATACTGTGGTGGAAAGGCTGTCTTAGAAAGAAAAATTCGTTATCAAAAGAGTTAAAGGGTTTAGATCTGCAAACGGGTATATTTACCTTACGGCAAATAAAAACAGCAACAAACAACTTTAATGTTGCCAATAAGATTGGAGAAGGAGGGTTTGGTCCTGTATACAAGGGAACTCTATTGGATGGAACTACAGTAGCTGTCAAACAACTCTCTTCAAAGTCAAGGCAAGGGAATTGTGAGTTTATTAATGAGATAGGCATGATTTCAGCTTTACAACACCCTTGTCTTGTTAAACTTTATGGATGTTGTGTTGAAGGAGATCAATTATTGTTGGTATATGAATATATGGAAAACAATAGTCTAGCTCGCGCTTTATTTGGCCCAGAAGAATACCAAATAAAATTAGATTGGCCAACAAGGCAAAAGATTTGTGTTGGTATCGCTAGAGGTTTGGCATATCTCCATGAAGAATCAAGATTAAAAATTGTTCATAGGGACATCAAGGCCACTAATGTTTTGCTTGATAAAGATCTCAATCCAAAGATATCCGACTTTGGTTTAGCCAAGCTCGACGATGAGGACAATACTCATATAAGCACCCAAATAGCTGGGACATATGGGTACATGGCTCCCGAATATGCTATGCATGGTTATTTGACTGATAAAGCAGATGTCTATAGTTTCGGAATTGTTGCCTTAGAACTTGTAAGTGGGAGGAGCAATACTGTTCAACGAAAAAAAGAAGCATTCCATCTTCTTGATTGGGCACATCTATTAAAAGAGAAAGGTAATCTAATGGAACTAGTTGATAAAAGATTGGGTTTGGAATTCAATGAAGAGGAGGTTATGATGATGATCAACATAGCTTTTCTATGCACAAATGTTACTGCCTCCCTTAGGCCTACAATGACTTCAGTGGTGAGCATGCTTGAAGGAAAATCTGTTGTCTTGGAGATGGTTTCAGAGTCAAGTGAAGTACTAGATGAGAAGAAGTTGGAGACAATGCGACATTATTACCAAGAGATTGAAAAAAATAAATTAAGCGGGACTCAAAACCGGAATATATTGGAGGATGACCCATGGACTGCTTCATCTACATCTGTGATTGATCTTTATCCTGTTAACCTAGATTCTTCTTATTGGGAGAAAAGAGGTTAG	3033	0.3841	MASLYLSLYSLLVAFCFASLACGATLSKDEVQGLKEIAKTIGKKDWDFSVDPCSGEGNWISTVEGSTEKNANNVTCDCSFVNGTICHVTNILLKGLDLVGTLPPELVKLPYLQEIDFTRNYLNGTIPKEWGSMNLIIIGLNGNRLSGSIPIELANITTLQSFTVEFNQLSGNLPHELGNLPNIQRLFLTSNNFTGELPASFAKLTTLQDVRIGDNNFSGKIPDFIQIWTSLNKLVIQGTGLSGPIPSGISLLGNLTDLRISDLKGSEYWPFPPLNNLKNLKILILRSCNINGTIPEYLGTITTLKTLDLSFNKLSGPIPKSFEVGLRKTDYIYLTGNFLSGSVPAWIQKVKNMDLSYNNFSIGSSGQPSCQQGNVNVFASSSMGNNTCLIYFAHSTLLVPVSYSLHINCGGKQVTINGSETYDADTDIAGPSRFHLGGTNWAFSSTGHFLDNDRGDYYVWQNQSRLSMTDAELYMDARVSPISLTYYGFCLGNGNYTVNLHFAEVMFIDGQTYKSLGRRVFDVYIQGNLVLKDFDIAEEVGGVNKAVTKSFSVVISSNTLDIRLYWDGKGTIGIPFKAVYGPLISAISVNPDFTPPSENGSSLSTGAVAGIVATIVVVIFILMFGILWWKGCLRKKNSLSKELKGLDLQTGIFTLRQIKTATNNFNVANKIGEGGFGPVYKGTLLDGTTVAVKQLSSKSRQGNCEFINEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLARALFGPEEYQIKLDWPTRQKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDDEDNTHISTQIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALELVSGRSNTVQRKKEAFHLLDWAHLLKEKGNLMELVDKRLGLEFNEEEVMMMINIAFLCTNVTASLRPTMTSVVSMLEGKSVVLEMVSESSEVLDEKKLETMRHYYQEIEKNKLSGTQNRNILEDDPWTASSTSVIDLYPVNLDSSYWEKRG.	1011

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca9g06111	1010	Gene3D	-	402	592	-	-
	Seca9g06111	1010	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	741	947	-	-
	Seca9g06111	1010	CDD	STKc_IRAK	671	937	-	-
	Seca9g06111	1010	SMART	serkin_6	665	942	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g06111	1010	Pfam	Leucine Rich Repeat	304	323	IPR001611	GO:0005515
	Seca9g06111	1010	Pfam	Malectin domain	404	587	IPR021720	-
	Seca9g06111	1010	Pfam	Protein tyrosine and serine/threonine kinase	667	935	IPR001245	GO:0004672\|GO:0006468
	Seca9g06111	1010	Gene3D	Phosphorylase Kinase; domain 1	630	740	-	-
	Seca9g06111	1010	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	787	799	IPR008271	GO:0004672\|GO:0006468
	Seca9g06111	1010	Gene3D	Ribonuclease Inhibitor	27	267	IPR032675	-
	Seca9g06111	1010	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	17	963	-	-
	Seca9g06111	1010	ProSiteProfiles	Protein kinase domain profile.	665	942	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca9g06111	1010	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	634	740	-	-
	Seca9g06111	1010	SUPERFAMILY	Protein kinase-like (PK-like)	649	942	IPR011009	-
	Seca9g06111	1010	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	402	592	-	-
	Seca9g06111	1010	Gene3D	Ribonuclease Inhibitor	268	372	IPR032675	-
	Seca9g06111	1010	SUPERFAMILY	L domain-like	73	346	-	-
	Seca9g06111	1010	Gene3D	Transferase(Phosphotransferase) domain 1	741	952	-	-
	Seca9g06111	1010	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At1g53420	27	264	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g06111	Seca-Chr9	175961873	175979757	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g06111	20	967	Receptor kinase-like Gene Family	AT1G53420	56.159	0.0	1018

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca9g06111		PK_Tyr_Ser-Thr	4.2e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g06111	-		-	gmx:732563	1427.54