Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06101 ATGGTTGATTCTGACCGCATTAACGATGACCTATCAAAGATTTCATCTCTCGCAAGTGAAGGAGATCCACCTAATGATGCAGGAAATGATGTCAAGTTGACTTCTAGGGACCAAAGAGAGGCTCTACCAGATGAGCCCAAGTGTGTTATATGTGGCCGCTATGGTGAGTATATATGTGATGAAACTGATGACGATGTTTGCAGTTTGGAATGCAAACAATCACTACTATGCAGAATTTCCAAATCGTCTTCTCAGGTTGGAGGTCTTCCACAACCTAAAAAGCTACCTGCAGCTGATGAGTGCTTTTATGTTAGAGATACTGATAACAGATCAGGAACTCCATCTTCTGATAGTGATCAGGCTGAATTGCTTAGAAAGAAACTTGACATTCATGTGAAGGGTGATGTAGTGGCACCGGTCTTGTCATTCACTTCCTGTAACCTCCCTGACAAAGTTCTCCATAATATAGAAGCAGCAGGATATGACATGCCTACACCTGTCCAAATGCAAGCAATACCTGCTGCTTTGATGAGGAAAAACATGCTTGTTTTGGCTGATACAGGATCTGGAAAGTCTGCTTCATTTCTTATTCCATTAGTTTCTCGTTGCGCAAGCCATCGTCTGACATTTGTTTCTGATAAAAGGAACCCTTTGGCTTTGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAATATCTTGGAAAGGGGTTACCTTTTAAAACAGCACTTGTAGTTGGTGGTGATGCTGTGGCTGGACAACTCTACCGTATTCAACAAGGAGTGGAGTTAATTGTGGGAACCCCAGGAAGGCTTGTTGATCTTTTACTGAATCATGAGATTGATTTAGATGATGTAATGACTTTCGTGGTGGATGAGGTGGACTGCATGCTGCAAAGTGGTTTTCGAGATCAGGTCTTGCAGATATATAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTAATGATATAGAGAAGATGGCAAACTCTCTGGCAAAAGGTACTGTGATTATCTCTGTTGGGGAACCTAATAGACCAAATAAGGCTGTGAAGCAACTAGCTATTTGGGTTGAGTCAAAACAAAAGAAGCAGAAGCTGTTTGACATTTTGGCAAGTGAGAAACATTTTAAGCCACCTGTTGTAATATATGTGGACTCCAGAATTGGGGCAGATCTCCTGGCGAATGCAATTACAGTTTCCACAGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGAAGTCATTTATGGTGGGTGAGGTCCCAGTGATTGTGGCTACTGGAGTTTTGGGTAGGGGAGTTGATCTATTGGGCGTGAGACAGGTAATCGTGTTTGACATGCCTAATTCCATTAAGGAGTATGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAAGAAGGTCAAGCTATAGTTTTTGTGAATAAGGAGAATAAGAATGTTTTCCGGGAATTAGTTGATGTGCTAAAATCTGCTGGAGCAGCTGTGCCTCGGGAGCTTGTCAATTCACAGTATACCACCGGATTTTTCTCTGGTGGCAAGGGTTCAAAAAAGAGAAAGCAAAGATGGTGA 1626 0.4219 MVDSDRINDDLSKISSLASEGDPPNDAGNDVKLTSRDQREALPDEPKCVICGRYGEYICDETDDDVCSLECKQSLLCRISKSSSQVGGLPQPKKLPAADECFYVRDTDNRSGTPSSDSDQAELLRKKLDIHVKGDVVAPVLSFTSCNLPDKVLHNIEAAGYDMPTPVQMQAIPAALMRKNMLVLADTGSGKSASFLIPLVSRCASHRLTFVSDKRNPLALVLTPTRELCIQVEEHAKYLGKGLPFKTALVVGGDAVAGQLYRIQQGVELIVGTPGRLVDLLLNHEIDLDDVMTFVVDEVDCMLQSGFRDQVLQIYRALSQPQVLMYSATMSNDIEKMANSLAKGTVIISVGEPNRPNKAVKQLAIWVESKQKKQKLFDILASEKHFKPPVVIYVDSRIGADLLANAITVSTGIKAVSIHGEKSMKERREIMKSFMVGEVPVIVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGQAIVFVNKENKNVFRELVDVLKSAGAAVPRELVNSQYTTGFFSGGKGSKKRKQRW. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06101 541 Pfam Helicase conserved C-terminal domain 372 483 IPR001650 -
Seca9g06101 541 Pfam HIT zinc finger 46 72 IPR007529 -
Seca9g06101 541 FunFam DEAD-box ATP-dependent RNA helicase 41 28 85 - -
Seca9g06101 541 CDD SF2_C_DEAD 360 492 - -
Seca9g06101 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 501 IPR027417 -
Seca9g06101 541 Gene3D - 27 85 - -
Seca9g06101 541 Gene3D - 351 524 IPR027417 -
Seca9g06101 541 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Seca9g06101 541 SMART helicmild6 401 483 IPR001650 -
Seca9g06101 541 Gene3D - 108 350 IPR027417 -
Seca9g06101 541 MobiDBLite consensus disorder prediction 1 38 - -
Seca9g06101 541 Pfam DEAD/DEAH box helicase 165 336 IPR011545 GO:0003676|GO:0005524
Seca9g06101 541 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 522 IPR001650 -
Seca9g06101 541 SMART ultradead3 160 363 IPR014001 -
Seca9g06101 541 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 348 IPR014001 -
Seca9g06101 541 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 120 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06101 Seca-Chr9 175765496 175769828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06101 135 503 Eukaryotic Initiation Factors Gene Family AT3G19760 29.947 2.60e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06101 K19466 - gmx:100781473 842.802