Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06098 ATGGTTGATTCTTACCCCATTAACGATGACCTATCAAAGATTTCATCTCTCGCAAGTGATGGAGATCCACCTAATGATGAAGGAAATGATGTCAAATTGACTTCTAGAGACCAAAGAGAGGCTCTACCAAATGAGCCCAAGTGTGTTATATGTGGCCGCTATGGTGAGTATATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAATCACTACTATGCAGAATTGCCAAATCTTCTTCTCAGGTTGGAGGTCTTCCAAAACCTAAAAAGCTGCCTGCAGCTGATGAGTGCTTTTATGTTAGAGATACTGATAACGGATCAGGAACTCCATCTTTTAATAAAGCAGCAGGATATGACATGCCTACACCTGTCCAAATGCAAGCAATACATGCTGCTTTGATGAGGAAAAACATGCTTGTTTTGGCTGATACAGGATCTGGAAAGTCTGCTTCATTTCTTATTCCATTAGTTTCTCGTTGCGCAAGCCAACGTCTGACATTTGTTTCTGATAAAAGGAACCCTTTGGCTTTGGTGTTAACACCTACCAGAGAGCTCTGTATACAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGGTTACCTTTTAAAACATCACTTATGGTTGGTGGTGATGCTGTAGTTGGACAACTTTACCGTATTCAACAAGGAGTGGAATTAATTGTGGGAACCCCAGGAAGGCTTGTTGATCTTTTACTGAATCATGAGATTGATTTAGATGATGTAGGAAGGCTTGTTGATCTTTTTGATTTTTTTTTAATTTTAAACTGTTTGAAAAACTGTTGTTGGGGGTCCATAGTGTTCTTCATGGCTCTGCCTTTGAGTGGCTCTGTATAG 867 0.3991 MVDSYPINDDLSKISSLASDGDPPNDEGNDVKLTSRDQREALPNEPKCVICGRYGEYICDETDDDVCSLECKQSLLCRIAKSSSQVGGLPKPKKLPAADECFYVRDTDNGSGTPSFNKAAGYDMPTPVQMQAIHAALMRKNMLVLADTGSGKSASFLIPLVSRCASQRLTFVSDKRNPLALVLTPTRELCIQVEEHAKLLGKGLPFKTSLMVGGDAVVGQLYRIQQGVELIVGTPGRLVDLLLNHEIDLDDVGRLVDLFDFFLILNCLKNCCWGSIVFFMALPLSGSV. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06098 288 Gene3D - 28 85 - -
Seca9g06098 288 SMART ultradead3 121 277 IPR014001 -
Seca9g06098 288 Gene3D - 113 257 IPR027417 -
Seca9g06098 288 MobiDBLite consensus disorder prediction 1 38 - -
Seca9g06098 288 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 118 256 - -
Seca9g06098 288 Pfam DEAD/DEAH box helicase 126 256 IPR011545 GO:0003676|GO:0005524
Seca9g06098 288 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 288 IPR014001 -
Seca9g06098 288 Pfam HIT zinc finger 46 72 IPR007529 -
Seca9g06098 288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 262 IPR027417 -
Seca9g06098 288 FunFam DEAD-box ATP-dependent RNA helicase 41 28 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06098 Seca-Chr9 175753669 175757918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06098 119 256 Eukaryotic Initiation Factors Gene Family AT3G13920 33.571 1.43e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06098 K19466 - gmx:100781473 358.221