Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06097 ATGGTTGATTCTTACCCCATTAACGATGACCTATCAAAGATTTCATCTCTCGCAAGTGATGGAGATCCACCTAATGATGAAGGAAATGATGTCAAATTGACTTCTAGAGACCAAAGAGAGGCTCTACCAAATGAGCCCAAGTGTGTTATATGTGGCCGCTATGGTGAGTATATATGTGATGAAATTGATGATGATGTTTGCAGTTTGGAATGCAAACAATCACTACTATGCAGAATTGCCAAATCTTCTTCTCATGTTGGAGGTCTTCCACAACCTAAAAAGCTGCCTGCAGCTGATGAGTGCTTTTATGTTAGAGATACTGATAACAGATCAGGAACTTCATCTTCTGATAGTGATCAGGCTGAATTGCTTAGAAAGAAACTTGACATTCATGTGAAGGGTGATGTAGTGGCACCGATCTTGTCATTCACTTCCTGTAACCTCCCTGACAAACTTTTCCATAATATAGAAGCAGCAGGATATGACATGCCTACACCTGTCCAAATGCAAGCAATACATGCTGCTTTGATGAGGAAAAACATGCTTGTTTTGGCTGATACAGGATCTGGAAAGTCTGCTTCATTTCTTATTCCATTAGTTTCTCGTTGCGCAAGCCATCGTCTGACATTTGTTTCTGATAAAAGTAACCCTTTGGCTTTGGTGTTAACACCTACCAGAGAGCTCTGTGTACAGGTTGAAGAGCATGCTAAATTGCTTGGAAAGGGGTTACCTTTTAAAACAACACTTGTGGTTGCTGGTGATGCTGTGGCTGGACAACTCTACCGTATTCAACAAGGAGTGGAATTAATTGTGGGAACCCCAGGAAGGCTTGTTGATCTTTTATTGAATCATGAGATTGATTTAGATGATGTAGGAAGGCTTGTTGATCTTTTTGATTTTTTTTTAATTTTAAACTGTTTGAAAAACTGTTGCTGGGGGTCCATAGTGTTCTTCATGGCTCTGCCTTTGAGTGGCTCTGTATAG 984 0.4035 MVDSYPINDDLSKISSLASDGDPPNDEGNDVKLTSRDQREALPNEPKCVICGRYGEYICDEIDDDVCSLECKQSLLCRIAKSSSHVGGLPQPKKLPAADECFYVRDTDNRSGTSSSDSDQAELLRKKLDIHVKGDVVAPILSFTSCNLPDKLFHNIEAAGYDMPTPVQMQAIHAALMRKNMLVLADTGSGKSASFLIPLVSRCASHRLTFVSDKSNPLALVLTPTRELCVQVEEHAKLLGKGLPFKTTLVVAGDAVAGQLYRIQQGVELIVGTPGRLVDLLLNHEIDLDDVGRLVDLFDFFLILNCLKNCCWGSIVFFMALPLSGSV. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06097 327 Gene3D - 106 296 IPR027417 -
Seca9g06097 327 SMART ultradead3 160 316 IPR014001 -
Seca9g06097 327 MobiDBLite consensus disorder prediction 1 38 - -
Seca9g06097 327 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 116 295 - -
Seca9g06097 327 Gene3D - 28 85 - -
Seca9g06097 327 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Seca9g06097 327 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 327 IPR014001 -
Seca9g06097 327 Pfam DEAD/DEAH box helicase 165 295 IPR011545 GO:0003676|GO:0005524
Seca9g06097 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 300 IPR027417 -
Seca9g06097 327 Pfam HIT zinc finger 46 72 IPR007529 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06097 Seca-Chr9 175750587 175752078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06097 142 295 Eukaryotic Initiation Factors Gene Family AT3G13920 32.051 1.26e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06097 K19466 - gmx:100781473 437.958