Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06087 ATGGGATCCTCGGGAGGAAATAGGAATCTTGACTATTTCGTAGCTAAGTTGACCCCCCATGAGGATATGTTGTTCATAGATAATAAGTTTTGGTTGAAGTTTCGAGACGAACTTAGGGGTCGCGACCTTATCCTATTGGACCCTGCTGGGTTTAGCTTTAATGTGTCTGTAGAGAAGTATGGGTATAATGGTCGTGGAATTATTACTGGAGTTCAAAACATAGTAGAACACTATAACTTGGCTGATAGTTACTGGGTATTTTTTAAATATAAAGGGGACTGTAGGTTTGACATTAGAGTAGCATTAGGAGATTTCGAGGTTAATTATCATAGGGTGGAAAGTGATAAAGATGATGATGTCCAACCTGTGGAGAATGGGGATGACCCTGAGGAGGACCCTGATGAGGACCCTGAGGAGGACCATGAGGGTCCCCTTTTTATGTGGGAAATTACTTTGACTAAGGCAGCTGCGTCCGGTGCTAACGTTTTGGTCATACCTGCTAGGATTGTGATGGACATATTGGACAAGAATCAGGAATTTGTGAACGTTATAGATGAGGGTGGTGAAATAATTCAATGTAAGCTTCTGAAGCCTAAAAGACGACCAAGTGAACGGTACCTATCCAGTGGGTGGTATGATTTTATTCGGGGAAAGAATTTGAAGGCGGGTGATAAGATAAAATTTTATTTAGATGATAGTATGAAATCTTTGAAAGCGGTAGTAGATCGCATTTGA 735 0.4109 MGSSGGNRNLDYFVAKLTPHEDMLFIDNKFWLKFRDELRGRDLILLDPAGFSFNVSVEKYGYNGRGIITGVQNIVEHYNLADSYWVFFKYKGDCRFDIRVALGDFEVNYHRVESDKDDDVQPVENGDDPEEDPDEDPEEDHEGPLFMWEITLTKAAASGANVLVIPARIVMDILDKNQEFVNVIDEGGEIIQCKLLKPKRRPSERYLSSGWYDFIRGKNLKAGDKIKFYLDDSMKSLKAVVDRI. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06087 244 CDD B3_DNA 144 233 IPR003340 GO:0003677
Seca9g06087 244 Gene3D - 137 243 IPR015300 -
Seca9g06087 244 MobiDBLite consensus disorder prediction 116 141 - -
Seca9g06087 244 SUPERFAMILY DNA-binding pseudobarrel domain 10 99 IPR015300 -
Seca9g06087 244 SUPERFAMILY DNA-binding pseudobarrel domain 144 236 IPR015300 -
Seca9g06087 244 MobiDBLite consensus disorder prediction 120 141 - -
Seca9g06087 244 ProSiteProfiles B3 DNA-binding domain profile. 148 244 IPR003340 GO:0003677
Seca9g06087 244 Pfam B3 DNA binding domain 150 241 IPR003340 GO:0003677
Seca9g06087 244 SMART B3_2 13 106 IPR003340 GO:0003677
Seca9g06087 244 SMART B3_2 148 244 IPR003340 GO:0003677
Seca9g06087 244 Gene3D - 6 102 IPR015300 -
Seca9g06087 244 PANTHER B3 DOMAIN-CONTAINING 27 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06087 Seca-Chr9 175592405 175593511 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca9g06087 B3 1.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06087 - K09287 mtr:120578430 50.8322