Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06086 ATGAACTCCTCCACGTCATCACCATCATCCTCCTCCAAGGCCAAAAAGAAGCAAACCACGGCAACACAAGAGCACCATCAACAACAACATGAAACTGCATGGGGAGGGAGGTACCTTGGCGTGAGAAGAAGGCCATGGGGAAGATATGCAGCTGAAATTCGTGACCCCTCCACGAAGGAGAGGCATTGGTTGGGCACATTCGACACCGCAGAGGAGGCCGCCCTGGCATACGACAGGGCGGCCCGCTCTATGCGCGGGTCACGTGCCCGAACCAACTTTGTGTATGCCGACACCCAGCCGGGCTCCTCCGTCACCACCATCCTCTCCCCGGATGAACAAACCCAACTCCATCACTCTCAAAAGCTCTCCTTCTTCAACCCAAACCCGTTTACCCAACAACCCGACGCAACTCCTCAATTCACGGTTTGCGGGTACCCGGGAATGATAGATACTACCACCGCCTGGGCGGCGGCGGTGGAAGTGGCCTCATCCGGGGGAGGTGGCATGGAGGGTTCACATTTTCATCAGGTGTTCGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGCTCCATGGGTTATGACATGGGTAATGGGTTTTATGGAGACAGCGTCGGGTTTTCGGATCCGGGTTCTGAAATCGGGTCGAGTGGGTCGGGTTACCCGTGTTTGGGGTTTGACTCTGGTGAGTACGTGCATAACCCACTTTTCAGTACAATGCCGACGGTTTCAGATAATGTGGTGACAGGAGCTGACGGTTTTGATTTGGGGAGCTCTTCTTATTTCTTTTGA 804 0.5448 MNSSTSSPSSSSKAKKKQTTATQEHHQQQHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYADTQPGSSVTTILSPDEQTQLHHSQKLSFFNPNPFTQQPDATPQFTVCGYPGMIDTTTAWAAAVEVASSGGGGMEGSHFHQVFDDGETQLPPLPPDITSSMGYDMGNGFYGDSVGFSDPGSEIGSSGSGYPCLGFDSGEYVHNPLFSTMPTVSDNVVTGADGFDLGSSSYFF. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06086 267 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Seca9g06086 267 MobiDBLite consensus disorder prediction 1 36 - -
Seca9g06086 267 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Seca9g06086 267 MobiDBLite consensus disorder prediction 1 17 - -
Seca9g06086 267 FunFam Ethylene-responsive transcription factor 2 37 95 - -
Seca9g06086 267 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Seca9g06086 267 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Seca9g06086 267 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Seca9g06086 267 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Seca9g06086 267 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Seca9g06086 267 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 132 - -
Seca9g06086 267 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06086 Seca-Chr9 175585937 175586740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06086 9 258 AP2-EREBP Transcription Factor Family AT5G13910 43.243 1.20e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g06086 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06086 K09286 - gmx:100809600 342.813