Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06085 ATGGATGTAAAATGTCAGGGTTGCTTCAACATAACTACCGTCTTTAGTCACTCCCAAACAGTTGTTGTATGTGGCAATTGTAAAACTGTTCTATGTCAGCCAACCGGGGGACGTGCTAGATTAACCGAAGGCTGCTCTTTTAGGAAGAAAGGAGACTGA 159 0.434 MDVKCQGCFNITTVFSHSQTVVVCGNCKTVLCQPTGGRARLTEGCSFRKKGD. 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06085 52 SUPERFAMILY Zn-binding ribosomal proteins 1 50 IPR011332 GO:0006412
Seca9g06085 52 Gene3D - 1 51 IPR023407 -
Seca9g06085 52 Pfam Ribosomal protein S27 1 50 IPR000592 GO:0003735|GO:0005840|GO:0006412
Seca9g06085 52 PANTHER 40S RIBOSOMAL PROTEIN S27 1 52 IPR000592 GO:0003735|GO:0005840|GO:0006412
Seca9g06085 52 FunFam 40S ribosomal protein S27 1 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06085 Seca-Chr9 175541560 175543641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06085 1 52 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 90.385 3.29e-32 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06085 K02978 - gmx:100499804 114.39