Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06081 ATGCATCCTTCCTGCAAAACCAAGAAGGAGAAGGGAGTAACCACACCCTCCAACTCCAAGGGACGAAAGGGCAGGCCTCGTGGCTCTAAGAACAAACCCAAGCCACCCTTAATAATTAAGGAGGATAGCAACCAACTTGTTAAATCAATCATCATTGAAATCTCTTCTGGAAATGACATTATTGACTCCATCATTAAGTTCGCTTCTTGTCATTGTGTCGGTATCTCAATGCTAAGTTGTCCAGGTTCTGTCTCTAATGTTACCCTTTGTCAACCTCTTTTTGATATTGCTCCTTTTTTGTCTTTTACTGGAGATTTCAACTTTATATCTCTCATGGGTACTTACATCAGTGGTGTTTTTACTCCACTCTCTCGCACCCTTTCTTGTTCCTCCTTTTTCATTAACTTCTCAGAATCACATAGCAAAGTATTTCGTGGGGTTGTTGGAGGAAAGGTTGTGGCTGCTGGTTGTGTGGTTGTTGTGGGTTCAATGTTCAAGAAACTTGTGCACCACAAGGTTGCATTATCAATGGAAGACTAA 540 0.4148 MHPSCKTKKEKGVTTPSNSKGRKGRPRGSKNKPKPPLIIKEDSNQLVKSIIIEISSGNDIIDSIIKFASCHCVGISMLSCPGSVSNVTLCQPLFDIAPFLSFTGDFNFISLMGTYISGVFTPLSRTLSCSSFFINFSESHSKVFRGVVGGKVVAAGCVVVVGSMFKKLVHHKVALSMED. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06081 179 ProSiteProfiles PPC domain profile profile. 43 179 IPR005175 -
Seca9g06081 179 MobiDBLite consensus disorder prediction 1 37 - -
Seca9g06081 179 Pfam Plants and Prokaryotes Conserved (PCC) domain 49 162 IPR005175 -
Seca9g06081 179 Gene3D - 47 177 - -
Seca9g06081 179 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 177 IPR014476 GO:0003680
Seca9g06081 179 MobiDBLite consensus disorder prediction 1 16 - -
Seca9g06081 179 SUPERFAMILY AF0104/ALDC/Ptd012-like 47 166 - -
Seca9g06081 179 CDD DUF296 48 115 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06081 Seca-Chr9 175496941 175497480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06081 23 179 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.540 1.77e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06081 - - adu:107463674 112.849