Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06080 ATGATCTCTCTCTCCAACAACAATTTTGATCTAGTGTCGTCACCAACACCACCCTCCTCCTCTAACCGAGAGTTATGCATCCTTCCCTGCAAAACCAAGGAGGAGAAAGGCGTAACCACATCCTCCAACTCCAAGGGACGAAAGGGCCGGCCTCGTGACTCTAAGAACAAACCCAAGCCACCCATCATAATCAAGGAAGATAGCAACCAACATGTTAAACCAATCATCCTTGAAATCTTTGCTGGAAATGACATTATTGAGGCCATTATCAAGTTTGCTTCCCGTCATTGTGCCGGTATCTCAGTGCTATGTTGTTCCGGTTCTGTCTCTAATGTTACCCTTTGCCATCCTCTTACCGATATCGCTCCTCCTTTATATTTTACGGGAGACTTCAACATTATATCTCTCATGGATACTTACATCAGTGGTGTTTTTACTCCACTCTCTCGTACCCTTTCTTGTTCCTCCTTTTTCATTAACTTCTCACAATCACAGAGCAAAGTATTTGGTGGGGTTGTTGGAGGAAAGGTTGTGGCTGCAGGTCGTGTGGTTGTTGTGGGTTCAATATTCAAGAAGCTTGAACACCACAAGGTGTGCATCATTAATGGAAGACTAGTTGAAGAGGGTGACCTAACATATGGGCCTGCCATTAATGTTGATGCAAGCAACCTTAGTGGCATCACCAACACCACCGCCGCTACCAATCCCAATCCCAATCCCAATGATATGTATGTTTTCAGCGTTACAAATTCAACCTCGCTGAATCGCCAGCTCCTTTCTCCATAA 786 0.4478 MISLSNNNFDLVSSPTPPSSSNRELCILPCKTKEEKGVTTSSNSKGRKGRPRDSKNKPKPPIIIKEDSNQHVKPIILEIFAGNDIIEAIIKFASRHCAGISVLCCSGSVSNVTLCHPLTDIAPPLYFTGDFNIISLMDTYISGVFTPLSRTLSCSSFFINFSQSQSKVFGGVVGGKVVAAGRVVVVGSIFKKLEHHKVCIINGRLVEEGDLTYGPAINVDASNLSGITNTTAATNPNPNPNDMYVFSVTNSTSLNRQLLSP. 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06080 261 Gene3D - 72 199 - -
Seca9g06080 261 MobiDBLite consensus disorder prediction 1 26 - -
Seca9g06080 261 ProSiteProfiles PPC domain profile profile. 68 216 IPR005175 -
Seca9g06080 261 CDD DUF296 73 140 IPR005175 -
Seca9g06080 261 MobiDBLite consensus disorder prediction 1 64 - -
Seca9g06080 261 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 187 IPR005175 -
Seca9g06080 261 SUPERFAMILY AF0104/ALDC/Ptd012-like 71 189 - -
Seca9g06080 261 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 197 IPR014476 GO:0003680
Seca9g06080 261 MobiDBLite consensus disorder prediction 38 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06080 Seca-Chr9 175474480 175475265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06080 48 198 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 37.419 7.54e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06080 - - rcu:8268528 116.701