Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06068 ATGAGCACCAACAACAATACCACTTTCTTCCCAAGCCAACAACAAATAACCACTTCACAATTTGTTGAGAGGCAGCAGGACCCTTCTTCTCAGCCTTTAAATCAAGGGATGAATAATAATATTGAAAGGAAAAAACACTATAGAGGAGTAAGGCAGAGACCATGGGGGAAATGGGCAGCAGAAATAAGAGACCCTAAGAAAGCAGCAAGAGTGTGGCTTGGCACTTTTGACACTGCAGAGGCTGCAGCTTCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGAAACAAAGCCAAACTCAATTTTCCTGAACTTGTTGCTAATAATATGGCACTGCCACCATCACCACCTAATAATAATGCTTCTGCTTCTGCTTCTGCTCCATTATCATCACAAGGAGGAGAAGGATTTCCAAACCTAATGCAGTATGCTCAAGTGCTTTGTAGTAAAGATGATGATGATCTTCAACGTGCTGCTTCAGGTCTTTACTATCAACATCATAACAATAATAATAATATTCCACCACCATTTTTCTCATCTTCTAATAAGCCTGGAGATCATTTTGGTTCTTATTCTTTTGATTTTGATGAAAGTAACACAAGGGGATCAGGATCATAG 618 0.3981 MSTNNNTTFFPSQQQITTSQFVERQQDPSSQPLNQGMNNNIERKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAASAYDAAALKFKGNKAKLNFPELVANNMALPPSPPNNNASASASAPLSSQGGEGFPNLMQYAQVLCSKDDDDLQRAASGLYYQHHNNNNNIPPPFFSSSNKPGDHFGSYSFDFDESNTRGSGS. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06068 205 MobiDBLite consensus disorder prediction 111 132 - -
Seca9g06068 205 CDD AP2 45 105 IPR001471 GO:0003700|GO:0006355
Seca9g06068 205 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Seca9g06068 205 PANTHER DNA-BINDING DOMAIN 25 149 IPR044808 GO:0003700|GO:0009873
Seca9g06068 205 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Seca9g06068 205 Pfam AP2 domain 46 95 IPR001471 GO:0003700|GO:0006355
Seca9g06068 205 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Seca9g06068 205 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Seca9g06068 205 Gene3D AP2/ERF domain 45 105 IPR036955 GO:0003700|GO:0006355
Seca9g06068 205 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Seca9g06068 205 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Seca9g06068 205 MobiDBLite consensus disorder prediction 112 132 - -
Seca9g06068 205 MobiDBLite consensus disorder prediction 173 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06068 Seca-Chr9 175300708 175302792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06068 26 163 AP2-EREBP Transcription Factor Family AT5G13330 46.497 3.78e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g06068 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06068 - - gmx:100806383 190.274