Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06066 ATGCAACCTTCTGCACCTTCTTCCTTCACTTTCGACCCTTCATCATCACAAACACAGTCATTTCTGAAACCTTGTTTCTCTTCTTTCTTCAATGCTAACTGTGGCAGCAGCAGCAGCAGCAGCAACATCAACAACAATAACCCTTTTGAGAATGGCTTCGATTTGGGCTCGCATGCTGGTTTCCTCGCTTCAAATTCCTCTGTTTTGATGGGTTTCTCTCCCCAAATGGGGTCCACTCTCGAGCTGAGTTCTAACGCCGAGTTCACTCAGACTCGTGCTGTTGAACTCAGTAGCGGGTTTGCTCCAATGGGTGTAGGAGAAGATCAAGGCTTTGATGGTTCTGGGTCTTCAAATGCTCTGTTTTCGAGCAAGACAAAGGTTTTGCCGCCGGTGGGTGCGCCGCCGACTCTATTCCAGAAACGGGCGGCGCGTTCCGGCTCCGGCGGTGAGGCTGATAAGGTGGGAGGGTTGATGGTTTCGCCGCCGCCGCGGTTCGCCGGATTTTCAGTTGGGGTGGAGGAGTTGGAGAAGAGGAGGAAGAGAGGGGAAGAGGAAGAGGTTGAGGAAGGGTTGAATTATGACTCTGATGAGGTAATTGAGATTGAAAAGATGGAGGAGAATGCAAATAACAATGATAATGATAATGGTGGAAAGCAGAAAGGGAAGAAGAAAGGGGTGCCAGCGAAGAATCTCTTGGCTGAGAGGAGGCGTAGGAAGAAACTCAATGATAGATTGTACATGCTTCGCTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTAATGCAGCGGATTAATGATCTTCACAATGAGCTAGATTCAAGCTCAGCTGCCTCATCTTTGCCAACTCCTACAAATTTTCACCCTGGGCCACCCACTCCGACAACCCTTCCTTGCCGGGTTAAGGAAGAGGTATCTCCTAGCACTGTGCCAAGCCCTAAAAACCAATCAGCAAAGGTAGAGGTTATGATTAGAGAAGGGAGAGCTGTCAATATCCATATGTTTTGCGCCCGCAGACCAGGTCTCTTGGTTTCCACCATGAAGGCAATGGATAAGCTAGGATTGGACATTCAGCAGGCTGTTATCAGCTGTTTCAATGGGTTTGCTTTAGATGTGTTTAGAGCTGAGCAGCAATGCAAAGAAGGCCAGGATGTCCTCCCCGAGCAAATTAAAGCAGTGCTGTTGGATATAGCAACTTTCCATGGTATGATGTGA 1254 0.4817 MQPSAPSSFTFDPSSSQTQSFLKPCFSSFFNANCGSSSSSSNINNNNPFENGFDLGSHAGFLASNSSVLMGFSPQMGSTLELSSNAEFTQTRAVELSSGFAPMGVGEDQGFDGSGSSNALFSSKTKVLPPVGAPPTLFQKRAARSGSGGEADKVGGLMVSPPPRFAGFSVGVEELEKRRKRGEEEEVEEGLNYDSDEVIEIEKMEENANNNDNDNGGKQKGKKKGVPAKNLLAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELMQRINDLHNELDSSSAASSLPTPTNFHPGPPTPTTLPCRVKEEVSPSTVPSPKNQSAKVEVMIREGRAVNIHMFCARRPGLLVSTMKAMDKLGLDIQQAVISCFNGFALDVFRAEQQCKEGQDVLPEQIKAVLLDIATFHGMM. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06066 417 MobiDBLite consensus disorder prediction 216 231 - -
Seca9g06066 417 FunFam BHLH transcription factor 221 289 - -
Seca9g06066 417 CDD ACT_UUR-ACR-like 345 406 - -
Seca9g06066 417 MobiDBLite consensus disorder prediction 286 312 - -
Seca9g06066 417 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 26 412 - -
Seca9g06066 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 300 IPR036638 GO:0046983
Seca9g06066 417 SMART finulus 231 280 IPR011598 GO:0046983
Seca9g06066 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 274 IPR011598 GO:0046983
Seca9g06066 417 Coils Coil 271 291 - -
Seca9g06066 417 MobiDBLite consensus disorder prediction 176 231 - -
Seca9g06066 417 Gene3D - 216 290 IPR036638 GO:0046983
Seca9g06066 417 CDD bHLH_AtAMS_like 228 298 - -
Seca9g06066 417 Pfam Helix-loop-helix DNA-binding domain 232 274 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06066 Seca-Chr9 175249426 175253420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06066 8 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.716 3.09e-109 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g06066 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06066 - - csav:115700779 426.017