Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06059 ATGTCAAGTGAGGTCTCTGTTCATTTTGCTAATAATAATCATCGCCATGAAGTGATAACAATCGGTATAATAATCCCTCTTTTCATAGGATGTTTATTATGCTTTTTTTGTTTTTTGAGAAAAATAAGTTCACCTCATCGAGAGTTACGGGAAAGAGCAGTTGAGTTCTCTAACAACTCAACCAATCCTCTCCCACACAATCAAACAAATTGTTTAATATGTTTGGAAGATTTTGAAAATAATCAACAACTTTTTACTTTACCTTGTGGGCACACATTTCATGAGAATTGTGTGTCTGCATATTTATCACGATGTAAAATATGTCCACTTTGTAGACAAAAGATTTTAGCTTAA 354 0.3249 MSSEVSVHFANNNHRHEVITIGIIIPLFIGCLLCFFCFLRKISSPHRELRERAVEFSNNSTNPLPHNQTNCLICLEDFENNQQLFTLPCGHTFHENCVSAYLSRCKICPLCRQKILA. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06059 117 ProSiteProfiles Zinc finger RING-type profile. 71 112 IPR001841 -
Seca9g06059 117 PANTHER SI:CH211-59O9.10 66 116 - -
Seca9g06059 117 SUPERFAMILY RING/U-box 70 115 - -
Seca9g06059 117 Pfam RING-like zinc finger 70 98 IPR001841 -
Seca9g06059 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 116 IPR013083 -
Seca9g06059 117 SMART ring_2 71 111 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06059 Seca-Chr9 175178281 175178634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06059 56 115 Rapid Response to Elicitors AT3G05200 37.705 9.40e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06059 - K19041 smin:v1.2.031240.t1 68.5514