Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06048 ATGGCGACAAGGTACTGGGTTGTCTCTCTTCCCGTTCAAAATTCCGCATCCACTCTCTGGAACCAATTGCAGGAACAAATCTCCAAGCATTCCTTCGATACTCCTCTTTACAGATTCAACATTCCCAATCTCCGCGTTGGAACGCTAGACTCCCTCCTCTCTCTAAGCGATGATCTTGTCAAGTCGAACAGTTTCATGGAAGGAGTGTCGCACAAGATCAGGCGCCAGATTGAGGAATTGGAGAGGGTATCAGGCGTGGTGAGCAGCGGGTTGACGGTGGATGGGGTGCCTGTTGATTCTTACTTGACGAGGTTTGTTTGGGATGAAGCCAAGTACCCAACTATGTCTCCGTTGAAGGAGATCGTGGATGGGATTCATGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTCCGTGTTTCTGAGTTCAACAATATCCGCAGTCAGCTTAATGCAATCAACCGAAAGCAAAGTGGAAGCTTAGCTGTCCGTGATCTTTCAAACTTGGTAAAGGCTGAGGATATTATAACTTCCGAACATTTAACTACCCTTCTAGCAGTTGTTCCCAAGTATTCACAGAAAGATTGGGTCTCAAGCTATGAAACATTGACAAGCTATGTGGTTCCCCGGTCTTCCAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAACCGTGTTGCAGACAATTTTAGAACTAGTGCACGGGAGAAAGGGTTCCAAATTCGTGATTTTGAATACAGTCCAGAATCACATGAGAGTCGGAAGCAGGAGTTAGAGAAATTGGTGGAAGATCAGGAAAGTTTGAGGGGCTCTCTGTTGCAATGGTGTTATACCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTATTTACTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGAAGCTTTGGTTCGTGTCATTCCAGGCATGTGTTTTAGCTCCGTCGGTCAAAGCTGAGAAGAAAGTACGTTCTATCCTTGAAGGCTTGAGTGATACCGCAAACAGTGCCTACTGGAAGACTGAGGAAGATGTAGGAGGTGGAATGGCTGCCCTAGCAGGTGATGCTGATGCCCACCCTTATGTCTCCTTCACTATTAATCTTGTTTGA 1155 0.4571 MATRYWVVSLPVQNSASTLWNQLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNSFMEGVSHKIRRQIEELERVSGVVSSGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVSEFNNIRSQLNAINRKQSGSLAVRDLSNLVKAEDIITSEHLTTLLAVVPKYSQKDWVSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFNRVADNFRTSAREKGFQIRDFEYSPESHESRKQELEKLVEDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLKLWFVSFQACVLAPSVKAEKKVRSILEGLSDTANSAYWKTEEDVGGGMAALAGDADAHPYVSFTINLV. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06048 384 Gene3D - 163 251 - -
Seca9g06048 384 Gene3D - 41 312 - -
Seca9g06048 384 FunFam V-type proton ATPase subunit C 163 251 - -
Seca9g06048 384 Gene3D Vacuolar atp synthase subunit c; domain 1 5 317 - -
Seca9g06048 384 SUPERFAMILY Vacuolar ATP synthase subunit C 1 383 IPR036132 GO:0015078|GO:0033180|GO:1902600
Seca9g06048 384 Pfam V-ATPase subunit C 5 377 IPR004907 GO:0033180|GO:0046961|GO:1902600
Seca9g06048 384 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 2 383 IPR004907 GO:0033180|GO:0046961|GO:1902600
Seca9g06048 384 CDD V-ATPase_C 5 381 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06048 Seca-Chr9 175089276 175097400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06048 1 383 Primary Pumps ATPases(2) AT1G12840 81.201 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06048 K02148 - gmx:100803728 682.945