Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06026 ATGGGTAAGGAAAAGATTCATATCAACATTGTGGTCATTGGCCATGTCGATTCCGGCAAGTCAACAACCACTGGCCACTTGATCTACAAGCTTGGAGGAATTGACAAGCGTGTTATTGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAAAGGTCTTTCAAGTATGCCTGGGTGCTTGACAAGCTTAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCTGGACACAGGGATTTCATTAAGAACATGATTACTGGAACATCCCAAGCTGACTGTGCTGTACTCATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGACAGACTCGTGAGCATGCTCTTCTTGCATTCACTCTTGGTGTGAGGCAGATGATTTGTTGCTGTAACAAGATGGATGCTACCACACCCAAGTACTCCAAGGCTAGATATGATGAAATTGTGAAGGAAGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCTGACAAGATTCCTTTTGTTCCCATCTCTGGTTTTGAGGGAGACAACATGATTGAAAGGTCTACAAACCTTGACTGGTACAAGGGCCCTACCCTTCTTGAGGCCCTTGATCAGATCAATGAGCCCAAGAGACCATCTGACAAGCCCCTCAGGTTACCCCTCCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTACCTGTAGGACGTGTTGAAACTGGTATCTTGAAACCTGGAATGGTGGTGACTTTTGCACCAACTGGACTGACAACTGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCACTGAGGCCCTTCCTGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTCAAGGATCTCAAGCGTGGTTATGTTGCTTCAAACTCCAAGGATGATCCTGCCAAGGAGGCTGCTAACTTTACCGCTCAGGTTATCATCATGAATCACCCTGGTCAGATAGGCAATGGCTATGCCCCTGTTTTGGACTGTCACACCTCCCACATTGCTGTCAAGTTTGCTGAACTTATGACCAAGATTGACAGGCGATCTGGCAAAGAGCTTGAGAAAGAGCCAAAATTCTTGAAGAATGGTGATGCTGGTTTTGTGAAGATGATCCCAACAAAACCAATGGTTGTTGAAACTTTCTCCGACTATCCTCCACTTGGTAGGTTTGCTGTGAGGGACATGCGTCAAACTGTTGCTGTTGGAGTCATCAAGAGCGTGGAGAAGAAAGATCCAACTGGAGCCAAGGTCACCAAGGCTGCACAGAAGAAGGGTGGAAAGTGA 1305 0.4598 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAQKKGGK. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06026 434 Pfam Elongation factor Tu domain 2 233 298 IPR004161 GO:0005525
Seca9g06026 434 PANTHER TRANSLATION FACTOR 4 418 - -
Seca9g06026 434 CDD EF1_alpha 9 212 - -
Seca9g06026 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 234 IPR027417 -
Seca9g06026 434 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 311 414 IPR009001 -
Seca9g06026 434 CDD EF1_alpha_III 308 411 - -
Seca9g06026 434 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 215 IPR000795 GO:0003924|GO:0005525
Seca9g06026 434 NCBIfam translation elongation factor EF-1 subunit alpha 1 418 IPR004539 GO:0003746|GO:0005525|GO:0006414
Seca9g06026 434 FunFam Elongation factor 1-alpha 214 301 - -
Seca9g06026 434 CDD EF1_alpha_II 215 305 - -
Seca9g06026 434 FunFam Elongation factor 1-alpha 308 415 - -
Seca9g06026 434 Pfam Elongation factor Tu GTP binding domain 7 207 IPR000795 GO:0003924|GO:0005525
Seca9g06026 434 FunFam Elongation factor 1-alpha 1 211 - -
Seca9g06026 434 Pfam Elongation factor Tu C-terminal domain 306 414 IPR004160 -
Seca9g06026 434 SUPERFAMILY Translation proteins 216 306 IPR009000 -
Seca9g06026 434 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Seca9g06026 434 PRINTS GTP-binding elongation factor signature 73 83 IPR000795 GO:0003924|GO:0005525
Seca9g06026 434 PRINTS GTP-binding elongation factor signature 89 100 IPR000795 GO:0003924|GO:0005525
Seca9g06026 434 PRINTS GTP-binding elongation factor signature 133 142 IPR000795 GO:0003924|GO:0005525
Seca9g06026 434 Gene3D - 1 213 IPR027417 -
Seca9g06026 434 Gene3D Translation factors 308 415 - -
Seca9g06026 434 Gene3D Translation factors 214 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06026 Seca-Chr9 174593594 174596298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06026 1 425 Eukaryotic Initiation Factors Gene Family AT5G60390 92.727 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06026 K03231 - gmx:100807572 848.966