Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06020 ATGGCGACGCCGTTAACGGGGTTGCAGCACTTGGACGGAGGCGGAGGAGTGGCGGTGCTTTCGAATCGTGTGAGCAATGTCGATTCTTCCTCCAATGGCAGTGGCGGCGGCGGCTTCAACAGCTCCTTATTGGAATCGCCAATTCTGATTTTCTCCTTCTTCCACAAAGCGATTAGGAACGAGCTCGATGCGCTCAACCGATTGGCCATGGCTTTCGCCACCGGTAACCGCTCCGACATCCGCCCTCTCTCCGAACGTTACCATTTCCTCAGATCGATGTACAGACACCACTCCAATGCCGAAGATGAGGTAATTTTTCCAGCTCTAGATAAACGTGTGAAGAATGTAGCACAGACATATTCTCTGGAGCACAAGGGTGAAAGTGATCTTTTTGACCATCTATTTGAGCTGTTGAACTCTTCCATCCCTAATGATGAAAGTTTCCCAAAGGAGTTAGCATCCTGTACGGGAGCTCTGCAGACATCAGTTAGTCAACACATGGCTAAGGAGGAGCAGCAAGTATTTCCGCTGCTTATTGAGAAGTTCTCTCTTGAGGAACAGGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGCAGAATTTCTTCCATGGCTTTCAACATCCATATCCCCTGATGAATCTCAGGATCTGCGGAAATGCTTAAGCAAGATAGTGCCAGGAGAAAAGCTTCTTCAAAAGGTTATTTTCGCCTGGATGGAAGGGAGAAGTAGTGCTAACACAGTTGAAAATTGTGTAGATCATTCTCAGGTTCGGTGTAGTCCTAGTCCTTTAACCCATCAGATTGGGAAAACAAAATGTGCATGCGAGTCCACAGCAACTGGGAAAAGGAAATATTCTGAATCTATGGTAGATGTTTCTGATACCATGGGAACACATCCTATAGATGAAATATTACTCTGGCATAATGCTATAAAAAAAGAGTTAAATGAAATAGCAGCAGAGACCAGAAAGATACAACATTCTGGAGATTTTGCTAATCTGTCTGCTTTTAATGAAAGGTTGCAATTCATTGCTGAAGTTTTCATATATCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAGTAGATGGAGAGTTTTCTTTCTTTCAAGAGCATGCTGAAGAAGAAAGTCAATTTAATGACTTCCGGTCTTTGATTGAAAGTATTCAAAATGAAGGAGAAACATCTAGTTCAGAAGCTGAATATTTTTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATAGAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTTGTGTATCAAAGCTTGTGCGTGATGCCTTTGAAATTGATTGAGCGTGTCCTACCATGGTTGATTAGATCAATAGCTGAAGATGAATCAGAGATGTTTCTGAAAAACATGCAACTGGCAGCTCCAGCAACAGATTCTGCTTTAGTCACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAAAGATGGTCTATGTTTGTCTCCAAGTGCATCAGGTTGCTGTCCTGGTAAACATATTGTCCGGTCCACTTGTATATGTGCTTCGGAATTGTCTGGTAGAGATTGCTCAGTATTAACTGAATCAGATGAAACCCAAAGATCAACCAAGAGAAACATAAAGGAGTTGCATGAAAATGGAGACATCCCTAAAACATCAGAAAATGACAATATCCAGAAACAATGTTGTAGTGCCCGATCTTGTTGTGTTCCAGGTTTAGGAGTCAGTAGTAACAATCTGGGACTGAGTTCACTTTCTACAGCCAAGTCCTTGCGCTCCTTGTCTTTCACCTCTTCTGCTCCATCTCTTAATTCTAGTCTATTCATATGGGAAACAGATAGCAGCTCATGTAATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTTCATATAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAATTATTCGGCAATTTACTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTCCCTGCATTGGAATCCAAAGAGGCACTTCATAATGTGAGCCATTCTTATATGCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGACATTTCTTGTGTTCTTTCTGAGCTTTCTGTGCTTCATGAAGCCTTGCAGAGGACCCATGCATCAGAGGATTTAAGTGAAAGTAATTTTGGAATTTCTGATGCCAATGATAATGATAATATCAGAAAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCTATAAGAGTGACCCTTGATCAGCATATTTTCAGGGAAGAACTTGAGCTCTGGCCATTGTTTGGGAAACATTTCACTGTGGAAGAACAGGACAAGATAGTGGGCCGGATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACACAAGATGAACAGAACAAAATGATGGACACATGGAAACAGGCAACTAAGAACACTATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAGAGTCCAGCAACTCTATCACGGACAGAAACATCAGAGCATAGCACTTCTCAAAGAGGTGCTGACTATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCGGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAAATCCGGAAAGTTTATCGAGACTCAACTCTTGATCCAAGGAGAAAAGCATATCTTGTGCAGAATCTAATGACAAGTCGTTGGATAGCTGCCCAACAGAAGTTACCTAAAGCTCTATCAGGGGAATCATCTAATAAACAAATAGAAGGATGCTCACCTTCATTTCGGGACCCAGAGAAACAAGTATTTGGTTGTGAGCACTACAAGAGAAATTGCAAACTTCGAGCTGCTTGTTGTGGCAAGTTATTTACATGCAGATTTTGCCATGACAATGCGAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCACTGCCTGACTATACAACCTGTTGGGCCAGTATGCATGTCACCTTCATGTAATGGACTTTCGATGGCAAAGTACTATTGCAACATTTGCAAGTTTTTTGACGATGAAAGAGAAAGTTACTTCGTAAAGAAAGTTGAAGTTGTAGAGGTTTCAAAGAAAAGAGACAGCACATTCAGGAAATACTAA 3291 0.4114 MATPLTGLQHLDGGGGVAVLSNRVSNVDSSSNGSGGGGFNSSLLESPILIFSFFHKAIRNELDALNRLAMAFATGNRSDIRPLSERYHFLRSMYRHHSNAEDEVIFPALDKRVKNVAQTYSLEHKGESDLFDHLFELLNSSIPNDESFPKELASCTGALQTSVSQHMAKEEQQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRKCLSKIVPGEKLLQKVIFAWMEGRSSANTVENCVDHSQVRCSPSPLTHQIGKTKCACESTATGKRKYSESMVDVSDTMGTHPIDEILLWHNAIKKELNEIAAETRKIQHSGDFANLSAFNERLQFIAEVFIYHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRSLIESIQNEGETSSSEAEYFSKLCSHADHIMETIERHFHNEEVQVLPLARKHFSFKRQRELVYQSLCVMPLKLIERVLPWLIRSIAEDESEMFLKNMQLAAPATDSALVTLFSGWACKARKDGLCLSPSASGCCPGKHIVRSTCICASELSGRDCSVLTESDETQRSTKRNIKELHENGDIPKTSENDNIQKQCCSARSCCVPGLGVSSNNLGLSSLSTAKSLRSLSFTSSAPSLNSSLFIWETDSSSCNVGSAERPIDTIFKFHIAIRKDLEYLDVESGKLCDGDETIIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCVLSELSVLHEALQRTHASEDLSESNFGISDANDNDNIRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECLKESPATLSRTETSEHSTSQRGADYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKALSGESSNKQIEGCSPSFRDPEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATLEMMCMHCLTIQPVGPVCMSPSCNGLSMAKYYCNICKFFDDERESYFVKKVEVVEVSKKRDSTFRKY. 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06020 1096 Pfam Hemerythrin HHE cation binding domain 55 178 IPR012312 -
Seca9g06020 1096 Pfam Hemerythrin HHE cation binding domain 646 809 IPR012312 -
Seca9g06020 1096 Pfam Hemerythrin HHE cation binding domain 304 438 IPR012312 -
Seca9g06020 1096 CDD Hr-like 307 436 - -
Seca9g06020 1096 Gene3D nmb1532 protein domain like 642 885 - -
Seca9g06020 1096 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 689 1075 - -
Seca9g06020 1096 Gene3D nmb1532 protein domain like 46 196 - -
Seca9g06020 1096 Gene3D nmb1532 protein domain like 306 455 - -
Seca9g06020 1096 CDD Hr-like 50 176 - -
Seca9g06020 1096 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1096 IPR017921 -
Seca9g06020 1096 SUPERFAMILY CHY zinc finger-like 984 1049 IPR037274 GO:0008270
Seca9g06020 1096 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Seca9g06020 1096 CDD Hr-like 648 808 - -
Seca9g06020 1096 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06020 Seca-Chr9 174496561 174505290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06020 1 1075 C2H2 Transcription Factor Family AT3G18290 65.055 0.0 1405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06020 K16276 - gmx:100791354 1892.47