Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06012 ATGACCTTCCTCTCCAAGTTGTGCCCCTGCTTGGAGAACCGTCTGAAGAGGGGCGGCGCAGCCTCCGACGACGGCGATTCCAACGACGCCGACGAATCTTTTAACCTCATATTCAGCCTCCACACTCTCCAGCTCGCCACCAATTTCTTCTCCAACCTCAACCAGCTCGGCCATGGAGGGTTTGGTCCTGTTTTCAAGGGATTGATGCCAAATGGTCAAGAAGTAGCTGTTAAGAAGCTGGCATTAGAATCTAGACAAGGAATTAAAGAATTTACCAACGAAGTCAAGCTATTGCTAAGACTTCAGCACAAGAACTTGGTTACATTACTAGGTTGTTGTGTAGAAGGACCTGAAAAGATGCTTGTCTATGAGTATCTACCAAACAAAAGCCTTGATCGCATTCTATTTGATAAAAGGAGGTCTTCATCTTTGGACTGGACAACACGATTTAGAATAGTTACAGGTGTGGCAAGAGGACTTCTCTACCTGCATGAAGAGGCCCCAGAAAGAATCATTCACAGAGACATTAAAGCTAGTAACATATTGCTGGATGAGAAACTAAATGCGAAAATTTCAGACTTTGGCTTGGCAAGGCTGTTTCCAGGGGAAGACACTCATGTGCAGACATTTAAGATTGCTGGTACACATGGTTACATGGCTCCTGAATATGCATTGCGTGGTTATCTGTCTGTAAAGACAGATGTTTTCAGTTATGGAGTCCTGGTGTTGGAAATAGTTAGTGGGAGAAAAAACCATGACGCACAGCTTGGTGCAGAAAAGGCAGATCTCTTGAACTATGTAAGTTGA 807 0.4436 MTFLSKLCPCLENRLKRGGAASDDGDSNDADESFNLIFSLHTLQLATNFFSNLNQLGHGGFGPVFKGLMPNGQEVAVKKLALESRQGIKEFTNEVKLLLRLQHKNLVTLLGCCVEGPEKMLVYEYLPNKSLDRILFDKRRSSSLDWTTRFRIVTGVARGLLYLHEEAPERIIHRDIKASNILLDEKLNAKISDFGLARLFPGEDTHVQTFKIAGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIVSGRKNHDAQLGAEKADLLNYVS. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06012 268 Gene3D Phosphorylase Kinase; domain 1 20 125 - -
Seca9g06012 268 SMART serkin_6 50 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06012 268 Pfam Protein kinase domain 51 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06012 268 FunFam Lectin-domain containing receptor kinase A4.3 126 268 - -
Seca9g06012 268 FunFam Cysteine-rich receptor-like protein kinase 2 16 125 - -
Seca9g06012 268 ProSiteProfiles Protein kinase domain profile. 50 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g06012 268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Seca9g06012 268 SUPERFAMILY Protein kinase-like (PK-like) 33 253 IPR011009 -
Seca9g06012 268 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 267 - -
Seca9g06012 268 Gene3D Transferase(Phosphotransferase) domain 1 126 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06012 Seca-Chr9 174423550 174427521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06012 16 268 Receptor kinase-like Gene Family AT4G23130 52.326 8.60e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca9g06012 Pkinase 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06012 - - lja:Lj2g3v0721200.1 452.595