Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06009 ATGTGTACTCCTTTAAAGAGTGTCACCTCTTCTGGAGAAGATAATAATGAACTTAGAAGAGGACCTTGGACTCTTGAAGAGGATGATTTGCTCATCAAATACATTGCTAATCATGGAGAAGGAAGATGGAATTTGCTAGCTTTGCATTCAGGATTAAGGAGAACAGGGAAGAGCTGCAGATTAAGATGGCTAAATTATCTAAAGCCAGATATTAAGAGAGGAAACTTAACCTCAGAAGAGCAACTTTTAATTTTTGAACTTCATTCAAAATGGGGGAACAGGTGGTCAAAAATTGCACAACACTTGCCAGGAAGAACAGATAATGAAATAAAAAACTATTGGAGAACAAGGATTCAGAAACAAGCAAGACATTTGAAAATTGACACAAACAAAACAGGATCTCCAGAAATTGTTAAACGTTTAAAGATGATAAGATGCCTTCAGAAAGCAAAAGAATCATCTCCTTCAGCTATGTCAATCCAAAACCAAGCAATTCCTTTGCCTCTTGATGATGTTTCTCATTATGCACCAATTGAGACTATACCAACACAAATCCCTTGTCAAGGAGCTTGTGTGAATGAAGGAGGTCCCAATTATTTGTATCAGCATGAGCAGAACTCAGACTCTGAGCACAAAAATAGTTCATGCATATCCTCTTCAGAATCAGCAAATATGTCAAACAATAACATGACTCAACCTTTGGAATGTCAATTTCAGGCCTTAAATAACAGTGACTTTGGCATCTATGTATATGATGGTTACCAAATTAATAACAATGTTAATGAGAGTGGTGCATTCAACCAGACAATGATTACTGAGGATTTGGAATGCACAATGGGTGATTACCAGATACCAGAAAGCAATTGGCTAGACAAGGATTTTTCATATAGCACGTGGAACATGAATGATTTGTGGCAAATTAGGAACATACAAAATTAA 939 0.3642 MCTPLKSVTSSGEDNNELRRGPWTLEEDDLLIKYIANHGEGRWNLLALHSGLRRTGKSCRLRWLNYLKPDIKRGNLTSEEQLLIFELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIDTNKTGSPEIVKRLKMIRCLQKAKESSPSAMSIQNQAIPLPLDDVSHYAPIETIPTQIPCQGACVNEGGPNYLYQHEQNSDSEHKNSSCISSSESANMSNNNMTQPLECQFQALNNSDFGIYVYDGYQINNNVNESGAFNQTMITEDLECTMGDYQIPESNWLDKDFSYSTWNMNDLWQIRNIQN. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06009 312 MobiDBLite consensus disorder prediction 1 20 - -
Seca9g06009 312 MobiDBLite consensus disorder prediction 1 17 - -
Seca9g06009 312 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 228 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca9g06009 312 MobiDBLite consensus disorder prediction 201 224 - -
Seca9g06009 312 SMART sant 72 120 IPR001005 -
Seca9g06009 312 SMART sant 19 69 IPR001005 -
Seca9g06009 312 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Seca9g06009 312 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Seca9g06009 312 Gene3D - 20 72 - -
Seca9g06009 312 CDD SANT 77 116 IPR001005 -
Seca9g06009 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
Seca9g06009 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 122 IPR017930 -
Seca9g06009 312 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Seca9g06009 312 Gene3D - 75 142 - -
Seca9g06009 312 FunFam Myb transcription factor 20 72 - -
Seca9g06009 312 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Seca9g06009 312 CDD SANT 22 67 IPR001005 -
Seca9g06009 312 FunFam MYB transcription factor 76 118 - -
Seca9g06009 312 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06009 Seca-Chr9 174380837 174382011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06009 15 308 MYB Transcription Factor Family AT1G68320 43.189 2.99e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g06009 Myb_DNA-binding 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06009 K09422 - gmx:778042 390.963