Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06008 ATGGCTGAATTCACAGAAAATTTGCAAAGCATTAAACCTTCTTTTTCTTTCTTAGATATTGATCCAAGCATGGAACTCCTAAATCAATTCATAGGGATAAACTCACAACATGTCATGGATAACTCAAACTTGAACATGCAGAACTTGATGCCTTTCTCCTGTGACAGCATCTTGGGCCCTCAAGAGCCTGAGTTTCCAGGAAACTTGGAAGAAAATTTTCCTGGTCTTCTTGTCCATCATGTCAATCACAATGCAGTTCCACTTTCCCTTCCAATTTTTCCATCAGAAAATGAAATCCATCAAGGTAAAAAGAGGAAAACAATGGATCTTCCAGAGACAAGCTCAGCAAACTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAGACAAAACATAGTTCTGGAAGAGGAAAGAGAGCAAAAAGCAATGTAACAGAAGAGGAGAAAGCAAAGGAAGTGGTTCATGTCAGAGCCAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTAAAGTGCTTACAGAATATTGTTCCAGGATGCTACAAGGTCAAGACATTTTCCTTATAA 600 0.3917 MAEFTENLQSIKPSFSFLDIDPSMELLNQFIGINSQHVMDNSNLNMQNLMPFSCDSILGPQEPEFPGNLEENFPGLLVHHVNHNAVPLSLPIFPSENEIHQGKKRKTMDLPETSSANSTPAVSESGSKTKHSSGRGKRAKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKVKTFSL. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06008 199 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 97 194 IPR024097 GO:0006355
Seca9g06008 199 MobiDBLite consensus disorder prediction 111 129 - -
Seca9g06008 199 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 199 IPR011598 GO:0046983
Seca9g06008 199 Gene3D - 151 197 IPR036638 GO:0046983
Seca9g06008 199 MobiDBLite consensus disorder prediction 138 167 - -
Seca9g06008 199 MobiDBLite consensus disorder prediction 100 167 - -
Seca9g06008 199 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 193 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06008 Seca-Chr9 174367167 174368994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06008 83 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 50.000 1.09e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g06008 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06008 - - gmx:100806942 317.39