Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g06003 ATGGGGGAAAATCTACCTCCTGGCTTCAGGTTCCATCCTACAGATGAAGAGCTCATCACATGTTATCTTTCAAGGAAAGTGTCTGATACTGCTTTCACTTGTAAAGCTATAGCTGTTGTTGATCTCAACAAATCTGAACCTTGGGACCTCCCAGGTAAGGCCTCAATGGGGGAAAAGGAATGGTATTTCTTCAGCATGAGAGACCGGAAGTATCCAACTGGGCTTAGAACCAATCGAGCCACTGAATCAGGGTATTGGAAAACCACAGGGAAGGATAAGGAAATTTTTCGTGCTGGAGTTTTGGTAGGAATGAAGAAAACCCTAGTTTTCTATAAGGGTAGAGCTCCAAAGGGTGAGAAAAGCAATTGGGTCATGCACGAATATAGACTCGAAAACAAGCATCACTTTAGAACTTCAAAGGATGAATGGGTGGTTTGCAGGGTTTTCCAAAAGAACTTAGCAACCAAAAAACCGCAACAAACATCGTCATCCCAACCAGAGTCCCCATGTGACACAACCTCAATGGTTAATGAATTTGGTGATGTTGAGCTGCCTAATTTAAATAATATTTCAAATTCATCCGAAAGACTCATTAACATTTCAGGACAAACTTTTAATAATGATCTCAGTAATAATAATGTTAACACAAGTATGAACTTGACTATGAATTGGCCAAATATGCCGAGTGCAAGCGGGGTTCCCTCTCTTACATCTCTCTCATGGCCTTCCGGGGTGCTGCATCCAAATATTTCTATGAATTCTTTACTTCTCAAGGCCTTACAACTTAGGAACTATCAACAAAAAGAAGCTGTTGCAGTAGCTACGGATCATTTTGGATCATACATGCCTCAAGGAGTTTCCCATGTTGGAACTGATCTAAGTTCAAATATCATTGCTTCTTCTTCAAAAGTTTTAGAATGCATGCCACAACATCAACCGGAGCAACCATTAGATTTGGACTCCATTTGGTGA 972 0.4074 MGENLPPGFRFHPTDEELITCYLSRKVSDTAFTCKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSMRDRKYPTGLRTNRATESGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKNLATKKPQQTSSSQPESPCDTTSMVNEFGDVELPNLNNISNSSERLINISGQTFNNDLSNNNVNTSMNLTMNWPNMPSASGVPSLTSLSWPSGVLHPNISMNSLLLKALQLRNYQQKEAVAVATDHFGSYMPQGVSHVGTDLSSNIIASSSKVLECMPQHQPEQPLDLDSIW. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g06003 323 FunFam NAC domain-containing protein 100-like 14 155 - -
Seca9g06003 323 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Seca9g06003 323 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Seca9g06003 323 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Seca9g06003 323 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Seca9g06003 323 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g06003 Seca-Chr9 174268034 174273841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g06003 1 323 NAC Transcription Factor Family AT3G18400 58.559 5.52e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca9g06003 NAM 3.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g06003 - - gmx:100787111 513.072