Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05994 ATGCGATTAAGTTGCAATGGATGCCGTGTTCTCCGCAGAGGGTGCAATCCTGAATGTCCAATTAGGCCCTGCCTCCATTGGATCCATTCCCCTGACTCTCAGGCCAACGCCACCCTCTTCCTCGCCAAATTCTACGGCCGTGCTGGCCTCCTCAACCTCCTCACCGCCGCACCTCAGCAACTCCAACCAGCGGTTTTCAAATCCTTGCTCTACGAAGCTTGTGGCCGGATCGTGAACCCGGTTTTCGGCTCGACCGGATTGCTCTCGACCGGGAGCTGGCACTTGTGTGAAGCCGCCGTTAAAGCCGTTCTAAGCGGCGCGCCGATTCAGCAGGCTCCATCTTTCGACGGTGCTGTTAGTCTGCAGCTTCAGGCATGCGATATTCGCCACGTGGCAAAGAGTGTGGGGCAATCGTGCGGCTCTGATAGGCTCCACAAGGTTAAGTCTCATACGAGGCAGTTCAAGCGGCGAGGGTTGAAACCGAAGCAAGAAGTGGTGGTAGCTTGTTGTGGAAGCAAGTTGGAAGGTTCGGTGAGTCATCATGAGTCTGGAGTGAGTGATAGCAGTTCCGTTGAGAGTGTGGCTCCAGCTCATGATGATCAAGAATTGGAGCTGGAGTTGACTTTGACCTTGGGGTGTGGGGTCCAGTGA 651 0.553 MRLSCNGCRVLRRGCNPECPIRPCLHWIHSPDSQANATLFLAKFYGRAGLLNLLTAAPQQLQPAVFKSLLYEACGRIVNPVFGSTGLLSTGSWHLCEAAVKAVLSGAPIQQAPSFDGAVSLQLQACDIRHVAKSVGQSCGSDRLHKVKSHTRQFKRRGLKPKQEVVVACCGSKLEGSVSHHESGVSDSSSVESVAPAHDDQELELELTLTLGCGVQ. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05994 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 208 - -
Seca9g05994 216 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Seca9g05994 216 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05994 Seca-Chr9 174127320 174129101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05994 1 209 AS2 family AT1G68510 47.436 2.43e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca9g05994 LOB 4.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05994 - - ccaj:109797229 277.715