Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05992 ATGATCAAAGAAATGAAAGGTGCAAGTGCATTAGGAGCCAAGACAGCAAGAGCTTGTGATAGCTGCTTAAGGGTAAGAGCAAGGTGGTATTGTGCAGCTGATGATGCTTTCCTATGCCATGGTTGTGATAACTTGGTTCATTCTGCAAACCAATTAGCAAGCAGGCATGAAAGGGTTAGGCTTCAAACTGCTTCCTCTAAGGTCAATCACTCATTGACCACTGATAAGGTAAACTCACAGTCACAAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCATAACAAACAACAACAACAACACAAGGATATTCAAGTAGAAGCAGAAGGAGTGGTTTTCAACAACACAAACACCCTTCCTCTTGTGCCAGAGTTAGGAAGTGAAGAACCACTTCTTGATGATGAGACTGATCAGGAGCAACTTCTCTGTCGTGTTCCTGTGTTTGATCCTTTTGATGAAGGGTTCTGCAGTATATACAATGAAGTGAAGGATGAGACCATGAAAAACAATGATGTTGTTGCTGCTGCTGGTGAAGAAGAAGCAGATGAAGCCTTTGATTTGGACAACTTTAATTCAGAGTTTCTCCCATCAGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTACTTGGTTGCAAAGAAGAAGATGTAATAGATGGTTATGTTAATGGACTTGGAGCCAAAGGTGCAATGGTGGTGAAGGTTAAGGATGAAGAACTTGAGGCTGATACATCTTGTCATTTGGATTCAATTCTTGACATGGACAGTGAGGTCTTTGATTGGAACATTGGCTCATCAGAATCACTGGCACAAAAAGAGGCAGTTCCATTGGTAGCAAGTGACAGTACTAAAGTGGTAACTAAAAAGGAGATTTTTTTGAGGCTTAATTATGAAGATGTTATCACTGCTTGGGCCAGCCAAGGTTCTCCATGGACAACAGGAATCCCACCTAAGTTCAATTTTGATGACTGCTGGCCAGACTTTTTGGGTTCAAGTGAAGCAGATGTTCAATGTTGTTATGGGGAAGGAAGGAGCTTAATGGGGCAACCAATAGGAGGTGCAGATGGGGGAAGAGAAGCAAGAGTTTCAAGGTACAGAGAGAAGAGAAGAACACGTTTGTTTGCAAAGAAGATAAGGTATGAAGTAAGGAAATTGAATGCAGAGAAAAGACCAAGAATGAAAGGTAGATTTGTCAAGAGAACATCCTTTGTTGGAGCCACTGCTTTGCAAGCTCAATTACCACTGACATCAAAGTGA 1266 0.4218 MIKEMKGASALGAKTARACDSCLRVRARWYCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASSKVNHSLTTDKVNSQSQAWHSGFTRKARTPRHNKQQQQHKDIQVEAEGVVFNNTNTLPLVPELGSEEPLLDDETDQEQLLCRVPVFDPFDEGFCSIYNEVKDETMKNNDVVAAAGEEEADEAFDLDNFNSEFLPSDLAEFAADVESLLGCKEEDVIDGYVNGLGAKGAMVVKVKDEELEADTSCHLDSILDMDSEVFDWNIGSSESLAQKEAVPLVASDSTKVVTKKEIFLRLNYEDVITAWASQGSPWTTGIPPKFNFDDCWPDFLGSSEADVQCCYGEGRSLMGQPIGGADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGATALQAQLPLTSK. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05992 421 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 10 405 - -
Seca9g05992 421 Pfam CCT motif 361 403 IPR010402 GO:0005515
Seca9g05992 421 SMART bboxneu5 14 61 IPR000315 GO:0008270
Seca9g05992 421 MobiDBLite consensus disorder prediction 70 88 - -
Seca9g05992 421 ProSiteProfiles CCT domain profile. 361 403 IPR010402 GO:0005515
Seca9g05992 421 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Seca9g05992 421 CDD Bbox1_BBX-like 18 61 - -
Seca9g05992 421 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Seca9g05992 421 MobiDBLite consensus disorder prediction 70 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05992 Seca-Chr9 174104308 174106944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05992 1 403 C2C2-CO-like Transcription Factor Family AT1G25440 45.103 1.08e-88 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca9g05992 zf-B_box 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05992 - - gmx:100802113 499.204