Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05959 ATGGGATCAGAAACTTTTCTCGAAGTGATATTAGCAATACTGCTACCACCTGTTGGTGTTTTCCTTCGTTATGGCTGTGGAGTTGAGTTCTGGATAGATCTGGTGCTGACTATAGTGGGATACATACCAGGGATTATATATGCAATTTATGTATTGGTTGGATGA 165 0.4 MGSETFLEVILAILLPPVGVFLRYGCGVEFWIDLVLTIVGYIPGIIYAIYVLVG. 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05959 54 Pfam Proteolipid membrane potential modulator 6 53 IPR000612 GO:0016020
Seca9g05959 54 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 2 53 IPR000612 GO:0016020
Seca9g05959 54 ProSitePatterns Uncharacterized protein family UPF0057 signature. 10 25 IPR000612 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05959 Seca-Chr9 173295361 173296161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05959 1 54 RCI2 Gene Family AT2G38905 92.593 2.38e-29 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05959 - - gmx:100789888 110.538