Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05950 ATGGGGAGGAAAGGGAGTTGGTTTTCTGCAGTGAAGAAGGTTTTTAGTTCAGATTCCAGAAAAGATAAGAAAAGCCACAAGTCAAAGAAAAAATGTACTCAGAAGGATTCAGAATTGGCATCTGAAGAAGCACTAGTTGCTGTTGTTCCCTCTCTTCCACCAATAGAAGATGTTAAATTAACTGAGGCAGAGAATGAACAGAGCAAACGTGCTTTTTCTTTGGCTTTTGCCACTGCTGTCGCCGCAGAGGCTGCTGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGTTCGTCTCACAAGTATGCCTCATTACACTGGAAAGACAAAGGAAGAAATAGCAGCTATCAAGATTCAGACTGCATTCCGTGGATATTTGGCAAGAAGGGCATTGCGTGCCTTGAGAGGTTTGGTGAGGCTGAAAACATTAATACAAGGGCAATCTGTTCAACGGCAAGCAACTAGTACCTTAAGATGCATGCAAACTCTAGCAAGACTGCAGTCTCAGGTTCGTGAAAGGAGAATTAGAATGTCTGAGGAGAACCAGGCTCTTCAGCGGCAACTACAGCAGAAACATGAAAAAGAACTTGAGAAATTGCGAGCTGCTCAGGTTGGAGAAGAATGGGATGATAGCTTGCAGTCAAAGGAGCAAATTGACGCAAAATTGTTGCACAGGCAAGAGGCTGCTTTGAGAAGAGAGAGGGCTTTGGCCTATTCATTCTCACATCAGCAAACATGGAAGAACTCTTCAAAATCAGTAAATCCCACATTTATGGACCCAAAGAATCCTCACTGGGGCTGGAGTTGGTTAGAGAGATGGATGGCTGCCAGGCCATGGGAGGGTATGGATCACAATGATCATGCATCTGTTAAGAGTGCAGCAAGCCATGCCACCATGTCTATTGGGGAAATCACAAAATCACATTCTCTCCGTGAATATAAATATAATCATGACAATAAGCCTTCCCCTGTTGGCCAAAAAGCAAGAAGGCCTGCTGCCACTCACAATTCCCCTTCAACCCCGGCTTCGAAGGCCCCATCTTCGTCATCTGTTAATGGAAAAGCAAGGCCATCAAGCTCCAAAGGCAGTGCCTGGGGTGTGGATGATGACTCAAGAAGCATGTTTAGCATTCAATCGGAACGTTATCATCGCAGATATAGCATTGCAGGATCATCATCAATGAGAGATGATGAGAGCCTTGCTAGCTCACCAGCCTTTCCAAGTTACATGGCTCTCACAAGTTCAGCAAAAGCCAGGTCCAAAATGCAAAGACCATCACCATCTAGTATAGTAGATAGAAATGGTCATGGAACACCTGGAGCAAAGAAGAGGCTTTCTTTCCCTGCTTCTCCAGCTAGTTCAAGAAGGCATTCTGGTCCTCCTAAGGTGGAAATGTTTTCCAACAAGGATGTTGCTACTGTCACATTAAGCAATGGAGGTAGCAGGTAG 1446 0.4523 MGRKGSWFSAVKKVFSSDSRKDKKSHKSKKKCTQKDSELASEEALVAVVPSLPPIEDVKLTEAENEQSKRAFSLAFATAVAAEAAVAAAQAAAEVVRLTSMPHYTGKTKEEIAAIKIQTAFRGYLARRALRALRGLVRLKTLIQGQSVQRQATSTLRCMQTLARLQSQVRERRIRMSEENQALQRQLQQKHEKELEKLRAAQVGEEWDDSLQSKEQIDAKLLHRQEAALRRERALAYSFSHQQTWKNSSKSVNPTFMDPKNPHWGWSWLERWMAARPWEGMDHNDHASVKSAASHATMSIGEITKSHSLREYKYNHDNKPSPVGQKARRPAATHNSPSTPASKAPSSSSVNGKARPSSSKGSAWGVDDDSRSMFSIQSERYHRRYSIAGSSSMRDDESLASSPAFPSYMALTSSAKARSKMQRPSPSSIVDRNGHGTPGAKKRLSFPASPASSRRHSGPPKVEMFSNKDVATVTLSNGGSR. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05950 481 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
Seca9g05950 481 PANTHER IQ-DOMAIN 5-RELATED 1 459 - -
Seca9g05950 481 SMART iq_5 109 131 IPR000048 GO:0005515
Seca9g05950 481 Coils Coil 166 196 - -
Seca9g05950 481 MobiDBLite consensus disorder prediction 331 358 - -
Seca9g05950 481 MobiDBLite consensus disorder prediction 15 37 - -
Seca9g05950 481 Pfam IQ calmodulin-binding motif 113 131 IPR000048 GO:0005515
Seca9g05950 481 MobiDBLite consensus disorder prediction 412 481 - -
Seca9g05950 481 Gene3D - 90 136 - -
Seca9g05950 481 MobiDBLite consensus disorder prediction 412 432 - -
Seca9g05950 481 MobiDBLite consensus disorder prediction 313 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05950 Seca-Chr9 173190861 173197422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05950 1 478 IQD Protein Family AT5G03040 48.577 2.82e-131 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05950 - - lja:Lj0g3v0301539.1 597.045