Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05947 ATGATGCTTCAAATCTCCTTCCATTACAACAAACCTCAACTATATATTATTAATATCATCTTCTTCTTGGTTACCACTGTTCTATCTGATAATCCAAAATTTGAGGCTTGCACACCTCGAAGCTGTGGAGCTGGCCCAACCATAAAGTATCCTTTCTGGATTCCTTATGAACAGGAATCATTTTGTGGCTATCCTCACTTTGAGATCACCTGCAGTGACAACAATCCAATTCTCAGAACTTCTAATTATGACCTTTTAGTAAAAGATATCTCTTACTCTAACTCTTCATTTACTGCAGCCAACATTGCTGTCTATGAGGACAAGTGTCCTGCTCCCATGTACAATTACAGCCTTGATCAAACTCCATTTGCCTACAGTTCTGAAAATTCCAATCTCTCTTTCTTCTACAATTGTACCACAGAACCTATTGATTACCCCACTTATGAAGTAAACTGTGCTAAAAATGCTACACATTATTCTTTTGCTGTTTTTCATAAGGAGGCACTGGAGCACAAAAACTACTCCTTGAATGAGTGTCAGTTTATGGTTAATGCCCCATTGAACATGAATGCTGCTGTTAATTTCACTAGCTTGTTGCGAATGAATTACTCTGAGATTTTGAAGATGGGGTTTCTTTTGAATTGGACTGCACCTGATTGCCAGCACTGTGAGAAAAGTGGTGGACGCTGTGGATTTGATGATTATAAGTTCCTCTGCTTCTGCAAGGATAAGTCCTACCTAAAAAGTTGTGGTGATGGTGTGGGAAGTGCAACAATGGCAGGATTGTTGATATGCATCATAATATGTAAGTCATCAATATGGAAAGAAAAATATTGGTTGATGACTAAGAGAGACCCAGATATCGAAACATTCTTAAAAGATCATGGAGCCATGTTACAAAAAAGATATAAATTTTCCGAAGTCAAGAAAATGACCAACTCCTTCAAAGATAAATTGGGTCAAGGTGGTTTTGGTGCCGTATACAAAGGAAAGCTACTCAATGGTCACCTAGTGGCTATAAAGATATTGAAGGCATCAAAAGGAAATGGTGAAGAATTCCTCAACGAGCTTGAGTTGGGCAATGATTTGAGACCTAGTCAAGTGATAGCTGCAGAAGAAAATGAGATTACAAGGAGAATGGCCATTGTTGGTTTATGGTGCATTCAAACATTTCCATGTGATAGACCTACAATGAGCAGGGTGATTGATATGCTGGAAGGCAGTATGAATTCATTGGAAATGCCACCAAAACCTTTTCTTTCTTCTCCATCTAGATCAGTACCAGAATCTTCTACTTCTTGA 1302 0.384 MMLQISFHYNKPQLYIINIIFFLVTTVLSDNPKFEACTPRSCGAGPTIKYPFWIPYEQESFCGYPHFEITCSDNNPILRTSNYDLLVKDISYSNSSFTAANIAVYEDKCPAPMYNYSLDQTPFAYSSENSNLSFFYNCTTEPIDYPTYEVNCAKNATHYSFAVFHKEALEHKNYSLNECQFMVNAPLNMNAAVNFTSLLRMNYSEILKMGFLLNWTAPDCQHCEKSGGRCGFDDYKFLCFCKDKSYLKSCGDGVGSATMAGLLICIIICKSSIWKEKYWLMTKRDPDIETFLKDHGAMLQKRYKFSEVKKMTNSFKDKLGQGGFGAVYKGKLLNGHLVAIKILKASKGNGEEFLNELELGNDLRPSQVIAAEENEITRRMAIVGLWCIQTFPCDRPTMSRVIDMLEGSMNSLEMPPKPFLSSPSRSVPESSTS. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05947 433 SUPERFAMILY Protein kinase-like (PK-like) 297 363 IPR011009 -
Seca9g05947 433 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 364 IPR044652 GO:0004672
Seca9g05947 433 MobiDBLite consensus disorder prediction 413 433 - -
Seca9g05947 433 Gene3D Phosphorylase Kinase; domain 1 290 370 - -
Seca9g05947 433 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Seca9g05947 433 ProSiteProfiles Protein kinase domain profile. 313 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05947 433 Pfam Wall-associated receptor kinase C-terminal 152 244 IPR032872 -
Seca9g05947 433 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05947 Seca-Chr9 173106143 173111646 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05947 357 432 Receptor kinase-like Gene Family AT5G38260 41.558 1.39e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca9g05947 WAK_assoc 5.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05947 - - lja:Lj2g3v0716020.1 516.924