Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05940 ATGACCAACTCGTTCAAAGATAAACTAGGTCAAGGTGGTTTTGGTGCCGTATACAAAGGAAAACTACTCAATGGTCGCCTAGTGGCTGTAAAGATATTGAAAGCATCTAAGGGAAATGGTGAAGAATTTATCAATGAGGTTGCTAGCATTAGTAGAACCTCTCATGTTAATATTGTCAACCTTCTTGGATTTTGTTTTGAAGGTTATAAGAAAGCTCTCATCTATGAATTTATGTCCAATGGCTCCCTTGATAAATTTATTTACAATAAGGGAAATAAAGCCATTGCATCTTTGAACTGGGAGAACTTGTATCAAATTTCCATAGGGATAGCTCGAGGGCTAGAGTACTTGCATAGGGGATGCAACACTCGAATTTTACATTTTGATATAAAACCACATAATATTCTTCTAGATGAGAATTTATGCCCCAAGATATCAGATTTTGGGCTTGCAAAGCTCTGCCCTAAGAGAGAGAGCATTATTTCAATGTCTGATGCTAGGGGAACAATGGGGTATGTGGCTCCAGAAGTGTGGAATAGACATTTTGGAGGAGTTTCACACAAGTCTGATGTTTATAGCTATGGAATGATGATATTAGAAATGGTGGGAGGGAGGAAGAACATTAATGTTGAAACTAGTCACACAAGTGAAATATACTTCCCACATTGGCTATACAACAGGCTTGAGTTGGGCAATGATTTGAGACCCGATGGGGTGATAGCTGCAGAAGAAAATGAGATTGCAAGGAGAATGGCCATTGTGGGTTTATGGTGCATTCAAACATTTCCAAGTGATAGACCTACAATGAGTAGAGTGATTGATATGTTAGAAGGCAACATGAATTCATTGGAAATGCCACCAAAACCTTTTCTTTCTTCTCCATCTAGATCAGTACCAGAATCTTCTACTTCTTGA 915 0.3847 MTNSFKDKLGQGGFGAVYKGKLLNGRLVAVKILKASKGNGEEFINEVASISRTSHVNIVNLLGFCFEGYKKALIYEFMSNGSLDKFIYNKGNKAIASLNWENLYQISIGIARGLEYLHRGCNTRILHFDIKPHNILLDENLCPKISDFGLAKLCPKRESIISMSDARGTMGYVAPEVWNRHFGGVSHKSDVYSYGMMILEMVGGRKNINVETSHTSEIYFPHWLYNRLELGNDLRPDGVIAAEENEIARRMAIVGLWCIQTFPSDRPTMSRVIDMLEGNMNSLEMPPKPFLSSPSRSVPESSTS. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05940 304 SMART serkin_6 3 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05940 304 PIRSF ILK 3 285 - -
Seca9g05940 304 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Seca9g05940 304 ProSiteProfiles Protein kinase domain profile. 3 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05940 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Seca9g05940 304 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Seca9g05940 304 MobiDBLite consensus disorder prediction 284 304 - -
Seca9g05940 304 Pfam Protein kinase domain 6 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05940 304 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 295 IPR045874 GO:0004672
Seca9g05940 304 SUPERFAMILY Protein kinase-like (PK-like) 5 277 IPR011009 -
Seca9g05940 304 Gene3D Transferase(Phosphotransferase) domain 1 78 286 - -
Seca9g05940 304 FunFam PR5-like receptor kinase 78 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05940 Seca-Chr9 173040371 173041285 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05940 1 303 Receptor kinase-like Gene Family AT1G66910 59.609 3.52e-132 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca9g05940 Pkinase 7.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05940 - - mtr:25496836 508.449