Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05935 ATGAATTTCAATGATGTGGGGTGTAAGAATGTTATCACAGTTCCTGTCCAGAGTCCCACCTCGGATTCCTCCTCTGTGGGGAATGTTTTAGGTAAAGGATTTGAGGTTAAGTGGAGTGGTGTGAATGGAGACAAATGTCATAGTTGCATATATTCTGGTGGGAGATGTGGATACAATGCATCTGCAAATGCATTTATGTGTCTCTGTCCTATTCGAAAACATTATGGTGGAATTTGTTACGAAATCTCAGCACCAAAACAGTATCATCCATGTGTTACCAGTGCAACAGTTGCAGTATTGTTGATATGTATCACTATTTTTTATTTTAGATACAAGTCATCAACATGGCAAAAGAAATTTTGGTTGACAACAAAAAGCAACCAACATATTGAAGTGTACTTAAAAAACCAAGGAGCCTTGCCTGTAACAAGATATAAATTCTCAGATGTCAAAAAAATGACCAACTCCTTCAAAATTAAATTAGGACAAGGTGGTTTTGGTTCTGTATACAAAGGAAATCTACTCACTGGTTCCCTTGTGGCTGTAAAGATATTGAATCCATCCAAAAGAAATGATGAAGAATTTATCAATGAGGTTGCTAGCATCAGTAAAACCTCTCATGTTAATATTGTAACCCTTCTTGGATTTTGTTTGGAAGGCCCCAAGAAAGCTCTCATCCATGAGTTTATGCCCAATGGTTCCCTTGAAAAATTTATCTACAGAAAAGGACATGAAAATATTATGTCTTTGACTTGGGATAATTTATATCAAATTGTTGTAGGGATAGTTAGAGGGCTAGAGTACTTGCATAGGGGATGCAACACTCGGATTTTACATTTTGACATAAAACCACATAATATCCTTTTGGATGAGAATTTCTGTCCCAAGATATCAGATTTTGGGCTTGCAAAGCTTTGTCCCAGGACAGAGAGCATTATTTCCATTTCTGGTTTTAGAGGAACAATAGGATATGTAGCCCCAGAAGTGTCAAATGAACATTTTGCAGGAGTTTCACACAAGTCTGATGTTTATAGCTATGGAATGATGCTGCTAGAAATGGTGGGGGGGAGGAAGAACATTAATGCGGAAGCTAGTCACCAGAGTGAGATATACTTTCCATATTGGGTGTACAAGAGGCTTGAGCAAGGTAGTGAATTGAGACCAAATGAGGTGATGATAACAAAAGAAAATGAGATTGCAAAGAGAATGACCATTGTGGGTTTGTGGTGCATTCAAACTTTTCCAAATGATAGACCTACAATGAGTAGAGTGATTGATATGTTGGAAGGCAACATGAATTCCCTTGAAGTACCTCCAAAACCTTTGCTTTCTATTCCTACTAGCTAA 1347 0.3764 MNFNDVGCKNVITVPVQSPTSDSSSVGNVLGKGFEVKWSGVNGDKCHSCIYSGGRCGYNASANAFMCLCPIRKHYGGICYEISAPKQYHPCVTSATVAVLLICITIFYFRYKSSTWQKKFWLTTKSNQHIEVYLKNQGALPVTRYKFSDVKKMTNSFKIKLGQGGFGSVYKGNLLTGSLVAVKILNPSKRNDEEFINEVASISKTSHVNIVTLLGFCLEGPKKALIHEFMPNGSLEKFIYRKGHENIMSLTWDNLYQIVVGIVRGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRTESIISISGFRGTIGYVAPEVSNEHFAGVSHKSDVYSYGMMLLEMVGGRKNINAEASHQSEIYFPYWVYKRLEQGSELRPNEVMITKENEIAKRMTIVGLWCIQTFPNDRPTMSRVIDMLEGNMNSLEVPPKPLLSIPTS. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05935 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 277 289 IPR008271 GO:0004672|GO:0006468
Seca9g05935 448 Gene3D Transferase(Phosphotransferase) domain 1 230 441 - -
Seca9g05935 448 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Seca9g05935 448 Gene3D Phosphorylase Kinase; domain 1 116 229 - -
Seca9g05935 448 ProSiteProfiles Protein kinase domain profile. 155 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05935 448 SUPERFAMILY Protein kinase-like (PK-like) 136 429 IPR011009 -
Seca9g05935 448 Pfam Wall-associated receptor kinase C-terminal 7 70 IPR032872 -
Seca9g05935 448 SMART serkin_6 155 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05935 448 PANTHER RUST RESISTANCE KINASE LR10-RELATED 127 441 IPR045874 GO:0004672
Seca9g05935 448 FunFam PR5-like receptor kinase 230 440 - -
Seca9g05935 448 Pfam Protein kinase domain 160 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05935 Seca-Chr9 172961617 172963618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05935 8 441 Receptor kinase-like Gene Family AT5G38260 46.292 2.90e-128 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca9g05935 Pkinase 4.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05935 - - gmx:102665158 617.076