Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05929 ATGACCAACTCCTTCAAAATTAAATTAGGACAAGGTGGTTTTGGTTCTGTATACAAAGGAAATCTACTCACTGGTTCCCTTGTGGCTGTAAAGATATTGAATCCATCCAAAAGAAATGATGAAGAATTTATCAATGAGGTTGCTAGCATAAGTAAAACCTCTCATGTTAATGTTGTAACCCTTCTTGGATTTTGTTTGGAAGGCCCCAAGAAAGCTCTCATCTATGAGTTTATGCCTAATGGTTCCCTTGAAAAATTTATCCATAGAAAAGGACATGAAACTATTATGTCTTTGACTTGGGAGAATTTATATCAAATTGCTATAGGGATAGCTAGAGGGCTGGAGTACTTGCATAGAGGATGCAACACTAGGATTTTACATTTTGACATAAAACCACATAATATCCTTTTGGATGAGAATTTTTGTCCCAAGATATCAGATTTTGGGCTTGCAAAACTCTGTCCCAGGACAGAGAGCATTATTTCAATTTCTAATGCTAGAGGAACAATGGGATATGTAGCCCCAGAAGTGTTGAATAAACATTTTGCAGGAGTTTCACACAAGTCTGATGTTTATAGCTATGGAATGATGTTGCTAGAAATGGTGGGAGGGAGGAAGAACATTAATGCTGAAGCTAGTCACACAAGTGAGATATACTTTCCACATTGGGTATACAAGAGGCTTGAGCAAGGTAGTGAATTAAGAGCACATGAGGTGATGATCACAGAAGAAAATGAGATTGCAAAGAGAATGACCATTGTGGGCTTATGGTGCATTCAAACGTTTCCAAATGATAGACCTACAATGAGTAGAGTGATTGATATGTTGGAAGGCAACATGAATTCCCTTGAAGTTCCTCCAAAACCTTTGCTTTCTTCTCGTGCTACCAGTGCAACGGTTGTAGTATTGTTGATATGTATCACTATTTTTTATTTTAGATACAATTCATCAACATGGCAAAGCAAATTTTGGTTGACAACAAAGAGTAACCAAGATATTGAGGTGTACTTAAAAAACAAAGGAGCCCTGCCTCTAAAAAGGTATAAATTCTCAGATGTTAAAAAAATGACCAACTCCTTCAAAGTTAAACTAGGACAAGGTGGATTTGGTGCAGTATACAAAGGAAATCTACTCATTGGTTCCCCTGTGGCTGTAAAGATATTGAATCCATCCAAAAGAAATGATGAAGAATTTATCAATGAGGTTGCTAGCATCAGTAAAACCTCTCATGTTAATGTTGTAACCCTTCTTGGATTTTGTTTGGAAGGCCCCAAGAAAGCTCTCATCTATGAGTTTATGCCTAATGGTTCCCTTGAAAAATTTATCCATAGAAAAGGACATGAAACTATTATGTCTTTGACTTGGGAGAATTTATATCAAATTGCTGTAGGTATAGCTAGAGGGCTGGAGTACTTGTATAGGGGATGCAACACTAGGATCTTACATTTTGACATAAAACCACATAATATCCTTTTGGATGAGAATTTCTGTCCTAAGATATCATATTTTGGGCTTGCAAAGCTCTGTCCTACGAAACAGAGCATTATTTCAATGTCAGATGCTAGAGGAACAATGGGATATGTAGCCCCAGAAAATTCTGATGTTTATAGCTATGGAATGATGCTCCTAGAAATGGTGGGAGGGAGGAAGAACATTAATGCTGAAGCTAGTCACACTAGTGAGATATACTTTCCACATTGGGTGTACAAGAGGCTTGAGCAAGGTAGTGAATTGAGACCAGATGAGGTGGTGATGATCACAGAAGAAAATGAGATTGCAAAGAGAATGACCATTGTGGGCTTATGGTGCATTCAAACGTTTCCAAATGATAGACCTACAATGAGTAGAGTGATTGATATGTTGGAAAGCAACATGAATTCCCTTGAAGTTCCTCCAAAACCTTTGCTTTCTTCTCCTACTAGATCAGTACCAGAATCTTCCACTTCTTGA 1950 0.3764 MTNSFKIKLGQGGFGSVYKGNLLTGSLVAVKILNPSKRNDEEFINEVASISKTSHVNVVTLLGFCLEGPKKALIYEFMPNGSLEKFIHRKGHETIMSLTWENLYQIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRTESIISISNARGTMGYVAPEVLNKHFAGVSHKSDVYSYGMMLLEMVGGRKNINAEASHTSEIYFPHWVYKRLEQGSELRAHEVMITEENEIAKRMTIVGLWCIQTFPNDRPTMSRVIDMLEGNMNSLEVPPKPLLSSRATSATVVVLLICITIFYFRYNSSTWQSKFWLTTKSNQDIEVYLKNKGALPLKRYKFSDVKKMTNSFKVKLGQGGFGAVYKGNLLIGSPVAVKILNPSKRNDEEFINEVASISKTSHVNVVTLLGFCLEGPKKALIYEFMPNGSLEKFIHRKGHETIMSLTWENLYQIAVGIARGLEYLYRGCNTRILHFDIKPHNILLDENFCPKISYFGLAKLCPTKQSIISMSDARGTMGYVAPENSDVYSYGMMLLEMVGGRKNINAEASHTSEIYFPHWVYKRLEQGSELRPDEVVMITEENEIAKRMTIVGLWCIQTFPNDRPTMSRVIDMLESNMNSLEVPPKPLLSSPTRSVPESSTS. 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05929 649 Gene3D Transferase(Phosphotransferase) domain 1 78 292 - -
Seca9g05929 649 Gene3D Transferase(Phosphotransferase) domain 1 433 635 - -
Seca9g05929 649 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Seca9g05929 649 Gene3D Phosphorylase Kinase; domain 1 320 432 - -
Seca9g05929 649 ProSiteProfiles Protein kinase domain profile. 3 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05929 649 SUPERFAMILY Protein kinase-like (PK-like) 8 277 IPR011009 -
Seca9g05929 649 FunFam PR5-like receptor kinase 433 633 - -
Seca9g05929 649 SUPERFAMILY Protein kinase-like (PK-like) 342 622 IPR011009 -
Seca9g05929 649 FunFam PR5-like receptor kinase 78 288 - -
Seca9g05929 649 ProSiteProfiles Protein kinase domain profile. 358 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05929 649 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Seca9g05929 649 CDD STKc_IRAK 9 278 - -
Seca9g05929 649 MobiDBLite consensus disorder prediction 629 649 - -
Seca9g05929 649 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 293 IPR045874 GO:0004672
Seca9g05929 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Seca9g05929 649 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Seca9g05929 649 SMART serkin_6 3 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05929 649 SMART serkin_6 358 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05929 649 Pfam Protein kinase domain 361 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05929 649 Pfam Protein kinase domain 8 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05929 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05929 Seca-Chr9 172890295 172901348 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05929 300 648 Receptor kinase-like Gene Family AT1G66910 50.138 5.11e-117 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca9g05929 Pkinase 8.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05929 - - qlo:115995021 793.112