Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05927 ATGCTAGGTAGTACTCCTGTGGCTGTTAAGATATTGAATCCATCCAAAGAAAAAGGAGAAGAATTTATCAATGAGGTTGCTAGTATCAGTAGAACCTCTCACATTAATGTTGTCACCCTTCTTGGATTTTGTTTGGAAGGTCGCAAGAAAGCTCTCATCTATGAGTTCATGCCCAATGGTTCCCTTGACAAGTTTATTTACAAAAAAGGGCCTGAAACCATTGCATCTTTGAGCTGGGATAATTTGTATGAAATCTCAATTGGGATAGCTCGTGGGTTAGAGTACCTGCATAAAGGGTGCAACACTAGAATTTTACATTTTGACATAAAACCACATAATATTCTCTTGGATGAGAATTTCTGCCCCAAGATATCAGATTTTGGGCTTGCAAAACTTTGTCCTGGGAAAAAGAGCATTATTTCAATGTCAGATGCTAGGGGGACAATGAGGTATGTAGCTCCAGAAGTGTGGAATAGAAATTTTGGGGGAGTTTCACATAAGTCTGATGTTTATAGCTATGGAATGATGTTGCTAGAAATGGTTGGAGGGAGAAAGAACATTAATGCTGAAGCCAATCATACAAGTGAGATATACTTCCCTTACTGGGTATACAAAAGGCTTGAGTTAGGCACTGATTTGGGACTTGATGGGCTCATGACCTCTGAAGAAAATGTGGTTGCAAAGAAAATGACTATGGTTGGTTTATGGTGCATTCAAACAATTCCAAATGATAGACCCACAATCAGTAAAGTGATAGATATGCTGGAAGGTGACATAAATTCCTTGGAAATGCCACCAAAACCTTTTTTATCATCTCCTCCAAGATCAGAAGCAGAATCTTCCAGTCCTTGA 852 0.3897 MLGSTPVAVKILNPSKEKGEEFINEVASISRTSHINVVTLLGFCLEGRKKALIYEFMPNGSLDKFIYKKGPETIASLSWDNLYEISIGIARGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPGKKSIISMSDARGTMRYVAPEVWNRNFGGVSHKSDVYSYGMMLLEMVGGRKNINAEANHTSEIYFPYWVYKRLELGTDLGLDGLMTSEENVVAKKMTMVGLWCIQTIPNDRPTISKVIDMLEGDINSLEMPPKPFLSSPPRSEAESSSP. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05927 283 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 276 IPR045874 GO:0004672
Seca9g05927 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672|GO:0006468
Seca9g05927 283 MobiDBLite consensus disorder prediction 264 283 - -
Seca9g05927 283 SUPERFAMILY Protein kinase-like (PK-like) 4 256 IPR011009 -
Seca9g05927 283 FunFam PR5-like receptor kinase 57 267 - -
Seca9g05927 283 PIRSF ILK 3 264 - -
Seca9g05927 283 Pfam Protein tyrosine and serine/threonine kinase 5 255 IPR001245 GO:0004672|GO:0006468
Seca9g05927 283 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05927 283 Gene3D Transferase(Phosphotransferase) domain 1 61 268 - -
Seca9g05927 283 ProSiteProfiles Protein kinase domain profile. 1 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05927 283 Gene3D Phosphorylase Kinase; domain 1 2 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05927 Seca-Chr9 172872966 172873889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05927 7 276 Receptor kinase-like Gene Family AT5G38280 57.875 2.35e-109 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca9g05927 PK_Tyr_Ser-Thr 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05927 - - gmx:102665158 455.292