Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05914 ATGCCAATCTTCTCGTTTTTATCTCACTGTTTCGTCCCTAATGGAAGTAGAAACCACCCTTCCATATCAATTGGTTCTGAGGTGAAGGGTAGCCAGTTGATGCCTGTGAATTCTGAGGATCCAAGCATCGCTGATCAAATGGTGTCTATGGATTCTAAGGTTCCAAGCAGATGGAGTGAACCAGTGCCTGTGATCTCTGAACTACCTAGCAGCCATGGTCAATCAATGTCGGTTGGTTCTGAGGTGCTTAACGGTCAGAGCCACATAAGTGAGATCTTCAAGTATTCTGAACTTGAAGAAGCCACCAACAATTTTGACCCTAGCAAAATACTTGGAAGTGGAGGCTATGGGACAGTATACTCTGGAATACTTAAAGATGGACGTTGCGTTGCAATAAAGCGCTTGCATGAAGACAAGTTCAAGATCATAAGGTTCCATGATAAGAAGCTTGAGGGGGAGAGACACAGAGTATTCATGAATGAAGTTTCAATGTTAACTTGCTTGAGGCATGAAAATCTTGTCCAACTGTATGGCTGCACCTCACCTCAGAGCCGTGAACTGCTTCTTGTGCAAGAATACATTCCCAATGGAACCGTTGCTAGTCATCTTCGTGGTAAAAAAAGAACCTTCCCATGGTCTACTCGACTAAACATCGCCATACAAACTGCAAGTGCATTGGCTTATCTTCATGCTTCCAACATTATCCACCGCGATGTGAAAACCAGTAATATTCTGCTTGATAGAAGTTTGAATGCCAAAGTTGCAGACTTTGGATTGTCACGCCTTATCCCACATGGTGTTACTCATATTACTACTGATCCTGCTGGGACTCCAGGTTATATTGATCCAGAATATTATGAACATTGTCATCTTTCTGATAAGAGTGATGTATATAGCTTTGGGGTGATATTGGTTGAGCTGATTTCATCTTTGCCTGCATTTAGTGAGAATGATAAACAACAGCCTTTTCTTTCAGACTTTGCCATGGATAAAATCATTTGTGGACAAGTCCAGAAGCTTGTTGACCCACATCTTGGATTTGAATCAAACAGCTGGACAAGTGAAACAATTACTGCAGTGTCTGAGTTGGCATTTAGCTGTCTACAACCTCAAAGAGACATGAGACCTTCCATGGGAGAGGTGTTAAATACTCTTGAGAGCATTAGAAGTGGAAGCTCTCAAAATGATCTTGCATGGGGTTCAAATAGTTGTTACAATGCCACCAAAGTTCATGTTGTGTCTCGCTTGCCTGATGATTATTTTGAGAAGAAATAG 1275 0.418 MPIFSFLSHCFVPNGSRNHPSISIGSEVKGSQLMPVNSEDPSIADQMVSMDSKVPSRWSEPVPVISELPSSHGQSMSVGSEVLNGQSHISEIFKYSELEEATNNFDPSKILGSGGYGTVYSGILKDGRCVAIKRLHEDKFKIIRFHDKKLEGERHRVFMNEVSMLTCLRHENLVQLYGCTSPQSRELLLVQEYIPNGTVASHLRGKKRTFPWSTRLNIAIQTASALAYLHASNIIHRDVKTSNILLDRSLNAKVADFGLSRLIPHGVTHITTDPAGTPGYIDPEYYEHCHLSDKSDVYSFGVILVELISSLPAFSENDKQQPFLSDFAMDKIICGQVQKLVDPHLGFESNSWTSETITAVSELAFSCLQPQRDMRPSMGEVLNTLESIRSGSSQNDLAWGSNSCYNATKVHVVSRLPDDYFEKK. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05914 424 SMART serkin_6 105 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05914 424 Pfam Protein kinase domain 108 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05914 424 Gene3D Transferase(Phosphotransferase) domain 1 194 406 - -
Seca9g05914 424 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 67 401 IPR044652 GO:0004672
Seca9g05914 424 ProSitePatterns Protein kinases ATP-binding region signature. 111 133 IPR017441 GO:0005524
Seca9g05914 424 SUPERFAMILY Protein kinase-like (PK-like) 86 386 IPR011009 -
Seca9g05914 424 FunFam Lectin-domain containing receptor kinase A4.3 194 397 - -
Seca9g05914 424 ProSiteProfiles Protein kinase domain profile. 105 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05914 424 Gene3D Phosphorylase Kinase; domain 1 80 193 - -
Seca9g05914 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05914 Seca-Chr9 172755847 172758673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05914 92 390 Receptor kinase-like Gene Family AT1G25390 55.263 2.34e-106 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca9g05914 Pkinase 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05914 - - tpra:123887372 622.468