Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05909 ATGTATGATTTAGGACCTGCTAGGTGTTATCGGGATTGGCGGATAAAAAACAAGCCATATCCCAAATCACACTTCTGTCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAGAAAAAAGGTGTTGATGAGTTTCCTTTCTGCGTCCATCTGGTTAGTTGGGAGAAGGAAAATGCTTCAAGTGAAGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGGCTAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCATTTCATGTTCTTAGGATCAACAAAATGCTTCCATGTGCTGGAGCTGATAGGCTTTAG 345 0.4116 MYDLGPARCYRDWRIKNKPYPKSHFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENASSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLPCAGADRL. 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05909 114 CDD Ribosomal_L16_L10e 44 104 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca9g05909 114 Pfam Ribosomal protein L16p/L10e 15 114 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca9g05909 114 PANTHER 60S RIBOSOMAL PROTEIN L10 6 114 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca9g05909 114 SUPERFAMILY Ribosomal protein L16p/L10e 6 114 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca9g05909 114 Gene3D Ribosomal protein L10e/L16 4 114 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05909 Seca-Chr9 172678240 172678584 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05909 6 114 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 88.991 2.03e-68 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05909 K02866 - apan:127259575 217.238