Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05907 ATGGTGGGGAATGTTGAAAACATAACAATTGTCGAAAATAATGCTGCTGATGCCATAGTGTCTTGCGCTTCTATGCTAGATAATGGAAGTTTTGTTCTTTTAGCTAAGGACAATAAGCAGAATGATAGCAATCTGGTTCTTTACTATTCACCACTCCATTCTGAAACACATGAACCTTACTGGGCTACTGGAACTCTAACTGAATCAGTCTGGACGCATGAAGTGTTATCTGTGGTTTCAACAGTTACTGTGTTACCATCAATGGGAAGCCTAATTGTGAATGCCCAGGGCTGCTACATAGAGAGGTGGGATCAGAATAAAGATCTAGTAGATTTCAAAGAGTATCCAAATGTGAACTGGCCTCTCAATGATTATGATCAGCTGATGGTAGCCATAAATAATGATGCTGGACAGTGTTGGAAGAAAAGATATCCTTTGAGTAATGGAAGGAAACACCCTAACATCAATGGAACAATAGCTCTTGTCAAGGTACCTAAAACAAGTTTGACCAAGCTTGACAAAGAACAATCTAAACTGGTTCTTGTCATATCAATACTTTTTGGGAGCTCTGTGCTCCTCAATTTCATTCTATTTGTTGCTTTTTTTTTAGCCTTTTACTTGTTCTACCACAGGAAGCATTTGAATCCAGCTGCAACAACAACAACAAGGTGTTTTACATACAAGGAGCTTGAAGAAGCAACTACAGGCTTCAAACAAATATTGGGTAGAGGTGCTTTTGGGACAGTATATAAAGGGGTAATAACATCAGATACCAGCAGATTTGTTGCTGTCAAAAAGCTAGATAAGGTTTTGCAAGAAGGTGAAAAGGAATTCAAAACAGAAGTGAGTGTGATTGGCCAAACCCACCACAGGAATTTGGTCTGTTTACTAGGTTACTGTGATGAAGGGGAGCATCGCCTTCTGGTCTCTGAGTATATGAGTAATGGCTCACTAGCAAGCTTTCTCTTTGGGATTTCAAGGCCTCATTGGAATCAAAGAGTGCAAATTGCTTTAGGAATTGCAAGAGGTCTCACATATTTGCATCAAGAGTGCAGCTCTCAGATCATTCATTGTGACATAAAGCCTCAGAATATACTCCTTGATGAGTTATTCACTCCAAGAATTTCTGATTTTGGGTTAGCAAAGCTTTTGTTGGCTGAGCAAACTAGAGCTGCTAAGACAGGTTTGAGAGGGACAATTGGTTACTTTGCACCTGAATGGTTTAGGAAAGCTTCAATCACAACTAAAGTAGATGTTTACAGTTTTGGAGTGTTGCTGCTAGAGATCATATGCTGCAAATCAAGTGTTGCCTTTTCAATGGAAAATGAAGAAGAGGCACTCCTTGATTGGGCATATCATTGTTATTGCCAAGGAAAAGTAGCTAAGTTGGTGGAAAATGATGATGAGGCAAAGAATGACATAAAGAGAGTAGAAAAACATGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCTTCACTAAGACCTTCCATGAAGAAGGTCATCCAAATGCTTGAGGAAGTTACGGAAGTTCTGTGCCACCACGCCCATCCATGTTCAATATAA 1566 0.3966 MVGNVENITIVENNAADAIVSCASMLDNGSFVLLAKDNKQNDSNLVLYYSPLHSETHEPYWATGTLTESVWTHEVLSVVSTVTVLPSMGSLIVNAQGCYIERWDQNKDLVDFKEYPNVNWPLNDYDQLMVAINNDAGQCWKKRYPLSNGRKHPNINGTIALVKVPKTSLTKLDKEQSKLVLVISILFGSSVLLNFILFVAFFLAFYLFYHRKHLNPAATTTTRCFTYKELEEATTGFKQILGRGAFGTVYKGVITSDTSRFVAVKKLDKVLQEGEKEFKTEVSVIGQTHHRNLVCLLGYCDEGEHRLLVSEYMSNGSLASFLFGISRPHWNQRVQIALGIARGLTYLHQECSSQIIHCDIKPQNILLDELFTPRISDFGLAKLLLAEQTRAAKTGLRGTIGYFAPEWFRKASITTKVDVYSFGVLLLEIICCKSSVAFSMENEEEALLDWAYHCYCQGKVAKLVENDDEAKNDIKRVEKHVMVAIWCIQEDPSLRPSMKKVIQMLEEVTEVLCHHAHPCSI. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05907 521 Gene3D Phosphorylase Kinase; domain 1 217 312 - -
Seca9g05907 521 SUPERFAMILY Protein kinase-like (PK-like) 216 506 IPR011009 -
Seca9g05907 521 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 108 512 - -
Seca9g05907 521 CDD STKc_IRAK 241 507 - -
Seca9g05907 521 Pfam Protein kinase domain 238 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05907 521 ProSiteProfiles Protein kinase domain profile. 235 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05907 521 Coils Coil 460 480 - -
Seca9g05907 521 SMART serkin_6 235 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05907 521 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 313 513 - -
Seca9g05907 521 ProSitePatterns Protein kinases ATP-binding region signature. 241 266 IPR017441 GO:0005524
Seca9g05907 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Seca9g05907 521 FunFam S-receptor-like serine/threonine-protein kinase 209 312 - -
Seca9g05907 521 Gene3D Transferase(Phosphotransferase) domain 1 313 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05907 Seca-Chr9 172665660 172668040 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05907 181 510 Receptor kinase-like Gene Family AT5G45780 39.595 1.44e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca9g05907 Pkinase 8.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05907 - - gmx:100796323 664.84