Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05905 ATGACATTCATTCCATTGTATGATGAGCAAGAAAATAATGCTGCTGGTGCCATAGTGTCTTGTGCTTCTATGCTAGATAATGGAAGTTTTGTTCTTTTAGATAAGGACAATAAGCAGAACGATAGCAATTTGGTTCTGTATTATTCACCACCACATTCTGAAACACATGAACCTTACTGGGCTACTGGAAGTCTAAAAACTGAATCAGTCTGGACGCATGAGGTGTTATCTGTGGTTTCAACAGTTACTGTGTTACCATCAATGGGAAGCCTAATTGTGAATGCCCTGAGCTGCTACATAGAGGGGTGGGATCAGAATAAAGATCTAGTAGATTTCAAAGAGTATCCAAATGTGAACTGGCCTCTCAATGATTATGATCAGCTGATGGGTGAGTCAATGGATAAGAATATGTGTAAACAAAAATGCCTTGAAGATTGCTTCTGTTCTGTAGCTCTTGTCAAGGAAGCATTTGAATCAAGCTGCAACAACAACAACAACAAGGTGTTTTCATACAAGGAGCTTGAAGAAGCAACTACAGGCTTCAAACAAATATTGGGTAGAGGTGCTTTTGGGACAGTATATAAAGGGGTAATAACATCAGATACCAGCAGATTTGTTGCTGTCAAAAAGCTAGATAAGGTTTTGCAAGAAGGTGAAAAGGAATTCAAAACAGAAGTGAGTGTGATTGGCCAAACCCACCACAGGAATTTGGTCTGTTTACTAGGTTACTGTGATGAAGGGGAGCATCGCCTTCTGGTCTCTGAGTATATGAGTAATGGCTCACTAGCAAGCTTTCTCTTTGGGATTTCAAGGCCTCATTGTGACATAAAGCCTCAGAATATACTCCTTGATGAGTTATTCACTCCAAGAATTTCTGATTTTGGGAAAGCTTCAATCACAACTAAAGTAGATGTTTACAGTTTTGGAGTGTTGCTGCTAGAGATCATATGCTGCAAATCAAGTGTTGCCTTTTCAATGGCAAATGAAGAAGAGGCACTCCTTGAGTGGGCATATCATTGTTATTGCCAAGGAAAAGTAGCTAAGTTGGTGGAAAATGATGAGGAGGCAAAGAATGACATGAAGAGAGTAGAAAAACATGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCTTCACTAAGACCTTCCATGAAGAAGGTCATCCAAATGCTTGAGGAAGTTACTGCAGTTCTGTGCCACCTCGCCCATCCATGTTCAATGTATAAGTTGAAACTTCATAATTTCTATGAAATAGTTCCAGGTTGTCTTTTTAATCTGTCAATCTATGAACACTTGTTCTATAATGAGATATTGATTACATAG 1323 0.3915 MTFIPLYDEQENNAAGAIVSCASMLDNGSFVLLDKDNKQNDSNLVLYYSPPHSETHEPYWATGSLKTESVWTHEVLSVVSTVTVLPSMGSLIVNALSCYIEGWDQNKDLVDFKEYPNVNWPLNDYDQLMGESMDKNMCKQKCLEDCFCSVALVKEAFESSCNNNNNKVFSYKELEEATTGFKQILGRGAFGTVYKGVITSDTSRFVAVKKLDKVLQEGEKEFKTEVSVIGQTHHRNLVCLLGYCDEGEHRLLVSEYMSNGSLASFLFGISRPHCDIKPQNILLDELFTPRISDFGKASITTKVDVYSFGVLLLEIICCKSSVAFSMANEEEALLEWAYHCYCQGKVAKLVENDEEAKNDMKRVEKHVMVAIWCIQEDPSLRPSMKKVIQMLEEVTAVLCHLAHPCSMYKLKLHNFYEIVPGCLFNLSIYEHLFYNEILIT. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05905 440 Gene3D Transferase(Phosphotransferase) domain 1 299 400 - -
Seca9g05905 440 Coils Coil 346 366 - -
Seca9g05905 440 Pfam Protein tyrosine and serine/threonine kinase 298 391 IPR001245 GO:0004672|GO:0006468
Seca9g05905 440 Pfam Protein tyrosine and serine/threonine kinase 181 266 IPR001245 GO:0004672|GO:0006468
Seca9g05905 440 SUPERFAMILY Protein kinase-like (PK-like) 166 413 IPR011009 -
Seca9g05905 440 SMART serkin_6 179 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05905 440 Gene3D Phosphorylase Kinase; domain 1 146 256 - -
Seca9g05905 440 ProSitePatterns Protein kinases ATP-binding region signature. 185 210 IPR017441 GO:0005524
Seca9g05905 440 FunFam S-receptor-like serine/threonine-protein kinase 151 256 - -
Seca9g05905 440 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 273 296 - -
Seca9g05905 440 ProSiteProfiles Protein kinase domain profile. 179 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05905 440 Gene3D Transferase(Phosphotransferase) domain 1 270 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05905 Seca-Chr9 172654370 172658028 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05905 167 392 Receptor kinase-like Gene Family AT5G38280 35.739 4.85e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca9g05905 PK_Tyr_Ser-Thr 3.8e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05905 - - gmx:100796323 393.66