Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05904 ATGGGGAGGAGACCTGCTAGGTGTTATCGGCAGATAAAAAACAAGCCATATCCCAAATCACGCTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAGAAAAAAGGTGTTGACGAGTTTCCTTTCTGCGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGTCTAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGGATGAGAGGTGCCTTTGGAAAGCCTCAGGGTACATGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGTAAGGACAGCAACAGCCATCATGCACAGGAAGCCCTACGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTTAGCCGTACTGATTATCTTAAGTACAAGTCAGAAAACAGAATTCTCCCTGATGGTGTGAATGCAAAGGTAAATGTGAAGCTGCATCATATTTGA 621 0.4396 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRILPDGVNAKVNVKLHHI. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05904 206 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca9g05904 206 PANTHER 60S RIBOSOMAL PROTEIN L10 1 200 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca9g05904 206 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca9g05904 206 Gene3D Ribosomal protein L10e/L16 1 205 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca9g05904 206 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Seca9g05904 206 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca9g05904 206 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca9g05904 206 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca9g05904 206 FunFam 60S ribosomal protein L10 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05904 Seca-Chr9 172652420 172654146 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05904 1 198 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 88.889 2.18e-132 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05904 K02866 - pvy:116105818 407.912