Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05903 ATGGGAAGCCTAATTGTGAATGCCCTGACCTGCTACATAGAGGGGTGGGATCAGAATAAAGATCTAGTAGATTTCAAAGAGTATCCAAATGTGAACTGGCCTCTCAATGATTATGATCAGCTGATGGGTGAGTCAGTGGATAAGGATATGTGTAAACAAAAATGCCTTGAAGATTGCTTCTGTTCTGTAGCCATAAATAATGATGCTGGACAGTGTTGGAAGAAAAGATATCCTTTGAGTAATGGAAGGAAACACCCTAACATCAATGGAACAATAGCTCTTGTCAAGCATTTGAATCCAGCTGCAACAACAAGGTGTTTTACATACAGGGAGCTTGAAGAAGCAACTACAGGCTTCAAACAAATATTGGGTAGAGGTGCTTTTGGGACAGTATATAAAGGGGTAATAACATCAGATACCAGCAGATTTGTTGCTGTCAAGAAGTTAGATAAGGTTTCGCAAGAAGGTGAAAAGGAATTCAAAACAGAAGTGAGTGTGATTGGCCAAACCCACCACAGGAATTTGGTTTGTTTACTTGGTTACTGTGATGAAGGGGAGCATCGCCTTCTGGTCTCTGAGTATATGAGTAATGGCTCACTAGCAAGCTTTCACTTTGGGATTTCAAGGCCTCATTGGAATCAAAGAGTGCAAATTGCTTTAAGAATTGCAAGAGGTTTGAGAGGGACAATTGGTTACTTTGCACCTGAATGGTTTAGGAAAGCTTCAATCACAACTAAAGTAGATGTTTACAGTTTTGGAGTGTTGCTGCTAGAGATCATATGCTGCAACTCAAGTGTTGCCTTTTCAATGGAAAATGAAGAAGAGGCACTCCTTGATTGGGCATATCATTGTTATTGCCAAGGAAAAGTAGCTAAGTTGGTGGAAAATGATGAGGCGGCAAAGAATGACATAAAGAGGGTAGAAAAACATGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCTTCACCAAGACCTTCCATGAAGAAGGTCATCCAAATGCTTGAGGAAGTTACTGCAGTTCTGTGCCACCTCGCCCATCCATGTTCAATGTATAAGTTGAAACTTCATATTTTCTATGAAATAGTTCCAGGTTGTCTTTTTAATCTGTCAATCTATGAACACTTGTTCTATAATGAGATATTGATTACATAG 1155 0.3974 MGSLIVNALTCYIEGWDQNKDLVDFKEYPNVNWPLNDYDQLMGESVDKDMCKQKCLEDCFCSVAINNDAGQCWKKRYPLSNGRKHPNINGTIALVKHLNPAATTRCFTYRELEEATTGFKQILGRGAFGTVYKGVITSDTSRFVAVKKLDKVSQEGEKEFKTEVSVIGQTHHRNLVCLLGYCDEGEHRLLVSEYMSNGSLASFHFGISRPHWNQRVQIALRIARGLRGTIGYFAPEWFRKASITTKVDVYSFGVLLLEIICCNSSVAFSMENEEEALLDWAYHCYCQGKVAKLVENDEAAKNDIKRVEKHVMVAIWCIQEDPSPRPSMKKVIQMLEEVTAVLCHLAHPCSMYKLKLHIFYEIVPGCLFNLSIYEHLFYNEILIT. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05903 384 ProSiteProfiles Protein kinase domain profile. 117 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05903 384 SUPERFAMILY Protein kinase-like (PK-like) 109 353 IPR011009 -
Seca9g05903 384 ProSitePatterns Protein kinases ATP-binding region signature. 123 148 IPR017441 GO:0005524
Seca9g05903 384 Gene3D Transferase(Phosphotransferase) domain 1 197 344 - -
Seca9g05903 384 Gene3D Phosphorylase Kinase; domain 1 100 194 - -
Seca9g05903 384 FunFam S-receptor-like serine/threonine-protein kinase 91 194 - -
Seca9g05903 384 Pfam Protein tyrosine and serine/threonine kinase 119 226 IPR001245 GO:0004672|GO:0006468
Seca9g05903 384 CDD PAN_AP_plant 17 92 - -
Seca9g05903 384 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 17 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05903 Seca-Chr9 172640473 172641885 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05903 78 336 Receptor kinase-like Gene Family AT5G39000 32.288 5.08e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca9g05903 PK_Tyr_Ser-Thr 9.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05903 - - gmx:100796323 517.309