Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05900 ATGAAGAAAAAAGGTGTTGACGAGTTTCCTTTCTGCGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAAGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGTCTAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGGATGAGAGGTGCCTTTGGAAAGCCTCAGGGTACATGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGTAAGGACAGCAACAGCCATCATGCACAGGAAGCCCTACGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTTAGCCGTACTGATTATCTTAAGTACAAGTCAGAAAACAGAATTCTCCCTGATGGTGTGAATGCAAAGGTAAATGTGAAGCTGCATCATATTTGA 510 0.4353 MKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRILPDGVNAKVNVKLHHI. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05900 169 Pfam Ribosomal protein L16p/L10e 13 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca9g05900 169 PIRSF RPL10a_RPL10e 1 145 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca9g05900 169 FunFam 60S ribosomal protein L10 1 168 - -
Seca9g05900 169 Gene3D - 142 165 - -
Seca9g05900 169 FunFam 60S ribosomal protein L10, putative 138 164 - -
Seca9g05900 169 PANTHER 60S RIBOSOMAL PROTEIN L10 1 163 IPR001197 GO:0003735|GO:0005840|GO:0006412
Seca9g05900 169 SUPERFAMILY Ribosomal protein L16p/L10e 3 139 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca9g05900 169 CDD Ribosomal_L16_L10e 4 129 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca9g05900 169 ProSitePatterns Ribosomal protein L10e signature. 71 92 IPR018255 GO:0003735|GO:0005840|GO:0006412
Seca9g05900 169 Gene3D Ribosomal protein L10e/L16 1 141 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05900 Seca-Chr9 172621952 172623804 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05900 1 161 Cytoplasmic Ribosomal Protein Gene Family AT1G26910 88.820 5.73e-107 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05900 K02866 - pvy:116105818 328.561