Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05897 ATGGGAAGCCTAATTGTGAATGCCCTGACCTGCTACATAGAGGGGTGGGATCAGAATAAAGATCTAGTAGATTTCAAAGAGTATCCAAATGTGAACTGGCCTCTCAATGATTATGATCAGCTGATGGGTGAGTCAGTGGATAAGGATATGTGTAAACAAAAATGCCTTGAAGATTGCTTCTGTTCTGTAGCCATAAATAATGATGCTGGACAGTGTTGGAAGAAAAGATATCCTTTGAGTAATGGAAGGAAACACCCTAACATCAATGGAACAATAGCTCTTGTCAAGCATTTGAATCCAGCTGCAACAACAAGGTGTTTTACATACAAGGAGCTTGAAGAAGCAACTACAGGCTTCAAACAAATATTGGGTAGAGGTGCTTTTGGGACAGTATATAAAGGGGTAATAACATCAGATACCAGCAGATTTGTTGCTGTCAAGAAGGGAGCATCGCCTTCTGGTCTCTCTGAGTATATGAGTAATGGCTCACTAGCAAGCTTTCACTTTGGGATTTCAAGGCCTCATTGGAATCAAAGAGTGCAAATTGCTTTAGGAATTGCAAGAGCAAAGCTTTTGTTGGCTGAGCAAACTAGAGCTGCCAAGACAGGTTTGAGAGGGACAATTGGTTACTTTGCACCTGCATGGTTTAGGAAAGCTTCAATCACAACTAAAGTAGATGTTTACAGTTTTGGAGTGTTGCTGCTAGAGATCATATGCTGCAAATCAAGTGTTGCCTTTTCAATGGAAAATGAAGAAGAGGCACTCCTTGATTGGGCATATCATTGTTATTGCCAAGGAAAAGTAGCTAAGTTGGTGGAAAATGATGAGGCGGCAAAGAATGACATAAAGAGGGTAGAAAAACATGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCTTCACCAAGACCTTCCATGAAGAAGGTCACCCAAATGCTTGAGGAAGTTACTGCAGTTCTGTGCCACCTCGCCCATCCATGTTCAATGTATATGTTGAAACTTCATATTTTCTATGAAATAGTTCCAGGTTGTCTTTTTAATCTGTCAATCTATGAACACTTGTTCTATAATGAGATATTGATTACATAG 1089 0.4013 MGSLIVNALTCYIEGWDQNKDLVDFKEYPNVNWPLNDYDQLMGESVDKDMCKQKCLEDCFCSVAINNDAGQCWKKRYPLSNGRKHPNINGTIALVKHLNPAATTRCFTYKELEEATTGFKQILGRGAFGTVYKGVITSDTSRFVAVKKGASPSGLSEYMSNGSLASFHFGISRPHWNQRVQIALGIARAKLLLAEQTRAAKTGLRGTIGYFAPAWFRKASITTKVDVYSFGVLLLEIICCKSSVAFSMENEEEALLDWAYHCYCQGKVAKLVENDEAAKNDIKRVEKHVMVAIWCIQEDPSPRPSMKKVTQMLEEVTAVLCHLAHPCSMYMLKLHIFYEIVPGCLFNLSIYEHLFYNEILIT. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05897 362 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 17 148 - -
Seca9g05897 362 Pfam Protein tyrosine and serine/threonine kinase 185 313 IPR001245 GO:0004672|GO:0006468
Seca9g05897 362 Gene3D Phosphorylase Kinase; domain 1 93 168 - -
Seca9g05897 362 ProSitePatterns Protein kinases ATP-binding region signature. 123 148 IPR017441 GO:0005524
Seca9g05897 362 Gene3D Transferase(Phosphotransferase) domain 1 189 322 - -
Seca9g05897 362 CDD PAN_AP_plant 17 92 - -
Seca9g05897 362 SUPERFAMILY Protein kinase-like (PK-like) 105 342 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05897 Seca-Chr9 172591137 172592550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05897 107 314 Receptor kinase-like Gene Family AT1G60800 30.104 4.89e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca9g05897 PK_Tyr_Ser-Thr 4.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05897 - - gmx:100796323 450.669