Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05882 ATGCCTGTTGTTACAGAACACATCAAATGGAGAAGACACAGAAACCATTTCAGGCACCCCATTTCAGAATCTGATCCAACCCCTCAAATCCCTTCAATAATCCAATCCACTCGCTGCAAATCCACCATCTCCTCTCTTCTTTCTTCTTTCTCCAACAACAACAATAACAACACCCCCAATGAAACTACACATACCAGTGGACAGAACAGGAACAAGAAAAAGAAGAAGAACAACATCAACAACAGCAATAGCAATAGCAACTTTTCTGCAGCAACCTTCAGAGGGCTTGGTTGCACCGCCGGTGCGTCACAGCAGGTGTCGGTTCCGGCGGTGATTCGATCCTCTGCTGATTGGCAAGGGAAGAAGAACAGAAAGAAGAAACATAGAAGGAACAGTAACAGCAACAAGACATGTCATGGGGTTGTTGATGATGGTCCCTGTCATGGTTCTGCTACCTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGATTCTCAACTGATGCTGCTGCCTCTGTGGATTGTGTTGTGGCAAGGAAGAATGTGTCTTCAAGAGGAAAACTTGATGCAGAGAGAATAACACACAAGGAGCGTCCATCTTACTTTGGAAGGCGCACTGTAAACCCAGAAAGTTTGTCATTTTTGGATGATGATTCTGACATTTTTACAGCACGCCCTGGATTAGAGTCTTTTAGCAATGCTAGATTTTATCGCCATGTGCCACATCCTTCCCCTGATGGTCTTGCTGAGATAATGATAATTCAAGGAAGACTAATGGGGGGACGATTTAATTCCTATGATCAATTTAGAGATTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTACTTGAGCTGGGTGAGAGAATTGGTTATGTGAACACTGGACTTAAAGAAGATGAGATGGGACTCAACATAAGGAAAACCAAAATTCTAATTTCAAATGATACACCAAAGCATCAAACAGACAAAAAGTGCAGCATTTGTCAGGAGGAGTATGAATCAGATGATGAGGTGGGGAGGTTAAATTGTGAACACAGCTTTCACTTTCAGTGTATAAAACAATGGCTTGTGCTTAAAAACTTCTGCCCAGTCTGTAAGCAAGAAGTTGTGGTTCGACACTGA 1125 0.4258 MPVVTEHIKWRRHRNHFRHPISESDPTPQIPSIIQSTRCKSTISSLLSSFSNNNNNNTPNETTHTSGQNRNKKKKKNNINNSNSNSNFSAATFRGLGCTAGASQQVSVPAVIRSSADWQGKKNRKKKHRRNSNSNKTCHGVVDDGPCHGSATFQDVWCGPGIGFSTDAAASVDCVVARKNVSSRGKLDAERITHKERPSYFGRRTVNPESLSFLDDDSDIFTARPGLESFSNARFYRHVPHPSPDGLAEIMIIQGRLMGGRFNSYDQFRDWRLDVDNMSYEQLLELGERIGYVNTGLKEDEMGLNIRKTKILISNDTPKHQTDKKCSICQEEYESDDEVGRLNCEHSFHFQCIKQWLVLKNFCPVCKQEVVVRH. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05882 374 MobiDBLite consensus disorder prediction 120 134 - -
Seca9g05882 374 FunFam E3 ubiquitin-protein ligase rnf12-A 293 372 - -
Seca9g05882 374 ProSiteProfiles Zinc finger RING-type profile. 326 367 IPR001841 -
Seca9g05882 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 372 IPR013083 -
Seca9g05882 374 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 41 370 IPR045191 GO:0061630
Seca9g05882 374 MobiDBLite consensus disorder prediction 47 66 - -
Seca9g05882 374 Pfam Ring finger domain 325 367 IPR001841 -
Seca9g05882 374 MobiDBLite consensus disorder prediction 113 137 - -
Seca9g05882 374 SUPERFAMILY RING/U-box 319 372 - -
Seca9g05882 374 SMART ring_2 326 366 IPR001841 -
Seca9g05882 374 MobiDBLite consensus disorder prediction 47 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05882 Seca-Chr9 172337964 172342883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05882 4 281 C3H Transcription Factor Family AT1G73760 39.130 3.56e-48 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05882 - - gmx:100818517 508.064