Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05830 ATGGCAGAACTCGATCTAATCAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAGGTTCTTGGTGAAGGTACCTATGGTGTCGTATACAAAGCCATTGATACCCAGACAGGACAGACGGTTGCAATTAAGAAGATTCGGCTTGGCAAGCAGAAAGAAGGGGTGAATTTTACAGCTCTTAGAGAAATTAAACTTCTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCATTCCCACATAAAGGGAATTTGCAACTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATTAGAGACCGGAATATTTTCCTTTCACCAGGCGATATAAAATCTTACCTTCAAATGACGCTTAAAGGTCTTGCTTTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGACCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGAAGCCCAGACCGCAGGTTTACTCATCAGGTGTTTGCTCGATGGTATAGAGCACCTGAGCTATTATTTGGTACCAAGCAGTATGGTTCAGGAGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTACTTCTACGTCGACCCTTTTTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTCGCAGCATTTGGAACTCCATCACCTTCTCAGTGGCCTGATATGGTATATCTTCCTGATTATGTTGAATACCAATTTGTTCCTGCCCCCACTTTGCGTTCTTTATTTCCAATGGCAAGTGAAGATGCTTTAGATCTGTTGTCAAAGATGTTTACATATGATCCAAAAGCTAGAATTTCAGCGCAGCAGGCATTAGAGCACAGGTACTTCTCTTCTGCACCACTGCCTACTGTTCCAGATAAGCTTCCAAGACCTGCCCCTAAGAAGGAGTCTAGGGCTTCAGATTTCAATTCACATGAGGGTCCCACTGTCTTATCACCTCCAAGAAAGTCCAGACAGACAGTTGGTGATAATACAGGCAAGAATGAGCCTGCACCAATGTCACTAGACTTTTCTCTCTTTGGATTAAAACCTCCAAATAGACCAACAATTACCAGGTAA 1113 0.4178 MAELDLIKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLQLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAFCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPSQWPDMVYLPDYVEYQFVPAPTLRSLFPMASEDALDLLSKMFTYDPKARISAQQALEHRYFSSAPLPTVPDKLPRPAPKKESRASDFNSHEGPTVLSPPRKSRQTVGDNTGKNEPAPMSLDFSLFGLKPPNRPTITR. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05830 370 MobiDBLite consensus disorder prediction 331 345 - -
Seca9g05830 370 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05830 370 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05830 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca9g05830 370 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Seca9g05830 370 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Seca9g05830 370 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Seca9g05830 370 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Seca9g05830 370 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Seca9g05830 370 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Seca9g05830 370 MobiDBLite consensus disorder prediction 300 370 - -
Seca9g05830 370 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Seca9g05830 370 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g05830 370 FunFam Cyclin-dependent kinase D-1 5 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05830 Seca-Chr9 171204851 171211578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05830 8 369 Core Cell Cycle Gene Families AT1G18040 76.550 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Seca9g05830 Pkinase 1.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05830 K02202 - cave:132172227 679.478