Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05827 ATGGATATCGAGGAGGACATCCGTTCTCTGCAGCTTGAATCAGCAGAAGACAATTATGGGGTTGTCAGTCCAGATGATGGAAGGACAGAAGAAGTGGAGGAATCTATTAAGATGGATGAAGATTCAAAGCAGGAGGTTCAGGCACAGCCTGTCCAGGCTGAGCCAAAAGATAAGGAAATTCCTCCTGTGCAAGATGAAGAAGATGAGTTGGAGTTAAATAACAAAAGACACTTGAATGTCGTGTTTATTGGTCATGTGGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAACGGACTATCCAAAAATATGAGAAAGAAGCAAAAGACAAAAGTAGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGACAACAAGGTTTACAATTTTGGATGCACCTGGTCACAAGAGTTATGTTCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGGGTGTTGGTCATTTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAAACCCGTGAACATGTTCAGCTTGCAAAAACACTGGGTGTGTCTAAGCTGCTTGTTGTTGTCAATAAAATGGACGATCCTACAGTGAAGTGGTCAAAAGAAAGATATGATGAAATTGAGTCAAAGATGATACCATTTTTGAAGCAATCAGGTTATAATGTGAAGAAAGATGTTCTCTTTTTACCAATATCTGGGCTGATTGGTTCAAACCTAAAAACAAGATTGGAAAAAAGCATATGTCCATGGTGGGATGGTCCTTGCCTATTTGAAGCTCTTGACGCTATTGAAGTTCCTCAACGAGATCCCAAAGGTCCTTTCAGGATGCCTATACTTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGTACTGTTCGTGAGGGAGATTCCATGTTGGTTATGCCAAATAAGGATCAAGTGAAAGTTGTTGCGATATTTATTGATGAGAATCGGGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATCAGATTATCTGGTGTTGAAGAAGAAGACATACTAACTGGGTTTGTCCTGTCTAGTATTGCAAATCCAATACCAGCTGTTACTGAGTTTGTTGCTCAGCTGGCAATCCTTGAATTGTTGGACAATGCTATTTTTACTGCTGGATACAAGGCTGTTCTGCACATCCACTCTGTAGTTGAAGAATGTGAGGTTATTGAGCTCATACATCAAATTGATCCAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTCTTCGTGAAGAATGGTGCAGGTGTTGTGTGCCGAATTCAGGTTAGTAACTCGGTATGCATTGAGAAATTCTCTGATTTTCCACAACTTGGGAGATTCACTCTTCGCACTGAAGGAAAAACTGTTGCAGTGGGAAAAGTCACTGGTCTTTAA 1506 0.4097 MDIEEDIRSLQLESAEDNYGVVSPDDGRTEEVEESIKMDEDSKQEVQAQPVQAEPKDKEIPPVQDEEDELELNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDDPTVKWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLIGSNLKTRLEKSICPWWDGPCLFEALDAIEVPQRDPKGPFRMPILDKFKDMGTVVMGKVESGTVREGDSMLVMPNKDQVKVVAIFIDENRVKRAGPGENLRIRLSGVEEEDILTGFVLSSIANPIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEVIELIHQIDPKTKKPMKKKVLFVKNGAGVVCRIQVSNSVCIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05827 501 Gene3D Translation factors 394 501 - -
Seca9g05827 501 PANTHER TRANSLATION FACTOR 66 499 - -
Seca9g05827 501 Pfam Elongation factor Tu GTP binding domain 75 277 IPR000795 GO:0003924|GO:0005525
Seca9g05827 501 SUPERFAMILY Translation proteins 298 391 IPR009000 -
Seca9g05827 501 CDD eRF3_C_III 393 501 - -
Seca9g05827 501 CDD EF1_alpha 79 300 - -
Seca9g05827 501 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 303 389 - -
Seca9g05827 501 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 131 146 IPR031157 -
Seca9g05827 501 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 75 304 IPR000795 GO:0003924|GO:0005525
Seca9g05827 501 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 56 299 - -
Seca9g05827 501 Pfam Elongation factor Tu C-terminal domain 392 500 IPR004160 -
Seca9g05827 501 MobiDBLite consensus disorder prediction 23 44 - -
Seca9g05827 501 Pfam Elongation factor Tu domain 2 319 385 IPR004161 GO:0005525
Seca9g05827 501 Gene3D Translation factors 304 389 - -
Seca9g05827 501 CDD eRF3_II 306 387 - -
Seca9g05827 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 310 IPR027417 -
Seca9g05827 501 Gene3D - 58 300 IPR027417 -
Seca9g05827 501 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 396 500 IPR009001 -
Seca9g05827 501 PRINTS GTP-binding elongation factor signature 174 185 IPR000795 GO:0003924|GO:0005525
Seca9g05827 501 PRINTS GTP-binding elongation factor signature 218 227 IPR000795 GO:0003924|GO:0005525
Seca9g05827 501 PRINTS GTP-binding elongation factor signature 79 92 IPR000795 GO:0003924|GO:0005525
Seca9g05827 501 PRINTS GTP-binding elongation factor signature 158 168 IPR000795 GO:0003924|GO:0005525
Seca9g05827 501 MobiDBLite consensus disorder prediction 1 67 - -
Seca9g05827 501 FunFam Putative translation elongation/initiation factor family protein 393 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05827 Seca-Chr9 171094969 171113482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05827 75 496 Eukaryotic Initiation Factors Gene Family AT5G60390 38.028 7.67e-96 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05827 K03267 - gmx:100793653 894.419