Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05824 ATGGGTATCAAGGATCTTCTCAGATTCATGAAGCCTTATATCGAACCCGTCCACATCAAGAAGTACGCTGGCAAACGCGTGGGTATTGATGCATATTCATGGCTTCACAAAGGGGCTTATTCATGTAGCATGGAGCTTTGTCTTGATATTGATAGTGAAAGAAAATTGCGGTACATTGAATACTTTATGCATAGAGTCAACCTGCTTCGCTACTATAAGATAACCCCAGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAGTCAGCAACTGAGGAAGAGAGGCACAGAAAACGAAGTACTAATAGTGAGTTGGCAATGGCGAAGCTCAAAGAAGGGAATGTTGGTGCAGCTACAGAGCTCTTCCAGAGAGCAGTGAATATTACTCCCCTCATGGCACATAAACTAATTCAGACTCTGAAATCAGAGAACATTGAGTTCGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACATGTCTAACCTTGAAGCAGAGAAGGGTGGAGTTGCAGCAGTGATCACAGAAGATAGTGATCTGATAGCATATGGCTGTCCAGCTATTATTTTTAAGATGGATCGGCATGGGAATGGTGAAAGAATAGAGTTAGAGAAGGTTTTTTCTGCTGAATCTAGTAGACCTTCATTTCGGGGTTTTGATATGAAACTTTTCAGAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTGTTGCTCGAGCTCATGCCTTAGTTTCCAAGTATCGGAATCTAGATCGTATCTTGTCTGTTCTTAAGTTTGAGAAAGGTGACCAAATGCCTGAAGATTACGCCAAGACCTTCAAAGAGGCAATTGCAGTCTTTCAGCATGCTCGAATATATGACACCAATACTAAAGAGCTTAAGCACATGAAGCCTCTTCCACAAGATTCTCTTGAGTCACTTGATGGAAAACTTGATTTTTTGGGACCGTATCCTTTATCCATGATTTTCTATCCCCATTTTGGGGCTAATGCCTTTTATGAAATCTTCCAATATTTACAATTTTATTCCCTATGCTTGTTGAACATGTTTAATGTTTTCCTTGATCAAATCCTAATGTAA 1104 0.4049 MGIKDLLRFMKPYIEPVHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDIDSERKLRYIEYFMHRVNLLRYYKITPVVVFDGGNVPCKSATEEERHRKRSTNSELAMAKLKEGNVGAATELFQRAVNITPLMAHKLIQTLKSENIEFVVAPYEADAQLAYMSNLEAEKGGVAAVITEDSDLIAYGCPAIIFKMDRHGNGERIELEKVFSAESSRPSFRGFDMKLFRGMCVLAGCDFLPSVPGIGVARAHALVSKYRNLDRILSVLKFEKGDQMPEDYAKTFKEAIAVFQHARIYDTNTKELKHMKPLPQDSLESLDGKLDFLGPYPLSMIFYPHFGANAFYEIFQYLQFYSLCLLNMFNVFLDQILM. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05824 367 Gene3D - 219 291 - -
Seca9g05824 367 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Seca9g05824 367 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Seca9g05824 367 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Seca9g05824 367 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Seca9g05824 367 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Seca9g05824 367 SMART xpgineu 141 213 IPR006086 GO:0004518
Seca9g05824 367 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Seca9g05824 367 FunFam exonuclease 1 218 291 - -
Seca9g05824 367 CDD H3TH_FEN1-like 225 295 - -
Seca9g05824 367 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Seca9g05824 367 SMART xpgn3 1 102 IPR006085 GO:0004518
Seca9g05824 367 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 322 IPR006084 -
Seca9g05824 367 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 325 IPR036279 -
Seca9g05824 367 FunFam Exonuclease 1, putative 1 214 - -
Seca9g05824 367 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Seca9g05824 367 Pfam XPG N-terminal domain 1 101 IPR006085 GO:0004518
Seca9g05824 367 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Seca9g05824 367 Gene3D - 1 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05824 Seca-Chr9 170957875 170963024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05824 1 306 Core DNA Replication Machinery Family AT5G26680 23.750 2.47e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05824 K10746 - gmx:100817932 582.022