Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05814 ATGAGAAAACCTCGCCTTGAGAAGGAAGCAACTACTAGAGGATCTTGGTCGAAGCAAGAAGACCAGAAACTCATTGACTACATACAAAAACATGGTGAAGGCTGCTGGCGTTCAATTTCTCAGGGTGCAGGGTTGCGACGCTGTGCCAAAAGCTGCCGGTTGAGATGGCTAAATTATTTAAGGCCTGACCTTAAACGTGGAGAGTTTGGAGAAGATGAAGAAGACTTAATCATCAGGCTTCATGCTCTTCTTGGCAACCGGTGGTCCTTGATAGCTGGAAGATTGCCGGGAAGGACAGATAATGAGGTGAAGAATTACTGGAATTCCCATATAAAAAAGAAGTTAGTAGAGATGGGTTATGATCCCAATCACCATCTTAAGATTGTTGCAACTGGAAAGTCATTTGGGAACAAGGAGGAAGATGGGACTAGTAGCAATAGCAATAGCAAGCATGTAAACAACTTGCATCTTGCAAGGGTTGAAAGTCAGATCTCTCATTCCACACGCGGAAATCAATGCAACCTTAACTTGAACCTCGACCTTACACTCTCCATACCTTCCCTACCCAAAGATAATTAA 579 0.4352 MRKPRLEKEATTRGSWSKQEDQKLIDYIQKHGEGCWRSISQGAGLRRCAKSCRLRWLNYLRPDLKRGEFGEDEEDLIIRLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIKKKLVEMGYDPNHHLKIVATGKSFGNKEEDGTSSNSNSKHVNNLHLARVESQISHSTRGNQCNLNLNLDLTLSIPSLPKDN. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05814 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Seca9g05814 192 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Seca9g05814 192 CDD SANT 68 111 IPR001005 -
Seca9g05814 192 Gene3D - 68 154 - -
Seca9g05814 192 FunFam MYB transcription factor 67 128 - -
Seca9g05814 192 CDD SANT 15 60 IPR001005 -
Seca9g05814 192 Gene3D - 13 65 - -
Seca9g05814 192 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Seca9g05814 192 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Seca9g05814 192 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Seca9g05814 192 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Seca9g05814 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Seca9g05814 192 FunFam MYB-related transcription factor 12 65 - -
Seca9g05814 192 SMART sant 65 113 IPR001005 -
Seca9g05814 192 SMART sant 12 62 IPR001005 -
Seca9g05814 192 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05814 Seca-Chr9 170354335 170357082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05814 2 186 MYB Transcription Factor Family AT4G34990 51.813 1.22e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca9g05814 Myb_DNA-binding 1.7e-17 CL0123