Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05803 ATGGACCCATCCTCGATCTCTCCTCCTCCAGCTTCAGCTCCGGCTCCGCTTCAGGCTCCGGCCCTCAACACCGTCCCCTTCGCCGTCGAACCGAACAACCACCCTCCAGCCGCCGCTTCAGCACCACCTGCAGCCCACCCACCCTATGCTGAGATGATATACACAGCAATCGAGGCACTGAAGGAGAAAAACGGTTCAAGCAAGAGGGCTATAGCGAAGTACATAGAACAAGTGTACAAGGAACAGCTTCCACCAACTCATGATACTTTGCTGAGTCACCACTTGAAGCGCTTGAAGAACAATGGAATGCTTGTTATGTTCAAGAAATCTTACAAGCTTCCTAGATCTGTTCCTGGTGATGCCGATGCTTCAGCTTCGGCCCAGGCCCTGGCCCCTGCTCCGGCTCCAGCCCCTGCTGCCTCCACTACCCCGGGCTCAAGGCCCAGGGGTCGTCCGAGGAAGACCCAGCCCCAGCCCAACGTCCAAGCCCAGAACGTTCCCCTTCAGCCTTTTCCAGCTGGGGATGTGAACAACGCGCAGCAGCAGAATGCGGAGCCCGTGTGGGCCGCGCTTGGGCTTGCAGATGAGCCTATGCCTGCTCAAGCAGCTGCAACTGATTCCAACAAGAGGCGCCCGGGCCGTCCGCGGAAGAGTGTGGCTCCGGGATTGGGCCAGCCTGGCCCGTTTGTCGCGACTCCAGCGCGAAGGGGCCGTCCTCCTGGGTCTAGGTCTCAGAAGAGGCCCGGCCGTCCTAAGGCCAACCCTGCTGCTGCTGTGGCCGTTTCTGGTGGGCCTAAGAGACGCCCGGGCCGCCCGCCCAAAAACCAGCAGCAGCAAGCCACTCCTATACCCTTTGCTGTTATCCCTGCTACTGCTGCCGCCGCGCCTGAAGCGCCGGCAGAGCAACCTGGTGGTGGTGCTGTAGCTGCTGTTGGGACTCCAGGGCGCAGAGGACGGCCAAGGAAGAATGCTGCTGTTGCTGCTGCTGTGGCAGCTGCTAATGTTGCTGTCGGCGGTGGTCGTGGTCGAGGACGTGGCCGTGGTCGCGGTGGTGGGGGCCGTGGACGAGGAAGAGGGCGTGGGGGATTGGCTGTTCAGCCCAAAAACCCCACCGGAAGAAGGCCCGGACGCCCAAAGAAGGGAACAACTTCTGCTGCTGTTTCACAAAATGCTGCTGCTAATGAAGATCTCAAGAGGAAACTTGAACACTTTCAATCCAAAGTGAAGGAATCTCTGGCAGTTCTTAAGCCTCATTTCAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATTCAAGAATTGGAAGTACTAGGAACCATGGACCTTAATGCTCCATTTAGGGATGAAACACTTCCACAGCAACAGCAGCTGCCACCACAAGAGCCACCACCAGCACCGCAGCAGCAGCAGCAACCGCCACAGCAACAGCTACTACCACAACAGCAGCAGCAGCTACTGCAGCAACATCTACCACCGCAACAACTGCCGCAACCACAGGTATATCAACAGCAATTTCCCCAGTTTCATCTGCAGCAGTATCACCAGCAGCAGCAAATGCAGTTCCACCAGCAGCAGCAGCCACAGCTATTCCAGCACCAGGCATCACCACCACACCACCAGCAACATTTTCATCCTTAG 1638 0.5763 MDPSSISPPPASAPAPLQAPALNTVPFAVEPNNHPPAAASAPPAAHPPYAEMIYTAIEALKEKNGSSKRAIAKYIEQVYKEQLPPTHDTLLSHHLKRLKNNGMLVMFKKSYKLPRSVPGDADASASAQALAPAPAPAPAASTTPGSRPRGRPRKTQPQPNVQAQNVPLQPFPAGDVNNAQQQNAEPVWAALGLADEPMPAQAAATDSNKRRPGRPRKSVAPGLGQPGPFVATPARRGRPPGSRSQKRPGRPKANPAAAVAVSGGPKRRPGRPPKNQQQQATPIPFAVIPATAAAAPEAPAEQPGGGAVAAVGTPGRRGRPRKNAAVAAAVAAANVAVGGGRGRGRGRGRGGGGRGRGRGRGGLAVQPKNPTGRRPGRPKKGTTSAAVSQNAAANEDLKRKLEHFQSKVKESLAVLKPHFNHESPVTAIAAIQELEVLGTMDLNAPFRDETLPQQQQLPPQEPPPAPQQQQQPPQQQLLPQQQQQLLQQHLPPQQLPQPQVYQQQFPQFHLQQYHQQQQMQFHQQQQPQLFQHQASPPHHQQHFHP. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05803 545 MobiDBLite consensus disorder prediction 453 485 - -
Seca9g05803 545 MobiDBLite consensus disorder prediction 198 281 - -
Seca9g05803 545 MobiDBLite consensus disorder prediction 471 485 - -
Seca9g05803 545 Coils Coil 57 77 - -
Seca9g05803 545 MobiDBLite consensus disorder prediction 153 167 - -
Seca9g05803 545 PRINTS AT-hook-like domain signature 370 380 IPR017956 GO:0003677
Seca9g05803 545 PRINTS AT-hook-like domain signature 264 275 IPR017956 GO:0003677
Seca9g05803 545 PRINTS AT-hook-like domain signature 146 156 IPR017956 GO:0003677
Seca9g05803 545 FunFam Histone H1.2 42 123 - -
Seca9g05803 545 MobiDBLite consensus disorder prediction 1 44 - -
Seca9g05803 545 MobiDBLite consensus disorder prediction 513 538 - -
Seca9g05803 545 Pfam linker histone H1 and H5 family 46 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca9g05803 545 Coils Coil 394 414 - -
Seca9g05803 545 MobiDBLite consensus disorder prediction 513 545 - -
Seca9g05803 545 PANTHER HISTONE H1 30 276 - -
Seca9g05803 545 MobiDBLite consensus disorder prediction 456 470 - -
Seca9g05803 545 Gene3D - 42 123 IPR036388 -
Seca9g05803 545 MobiDBLite consensus disorder prediction 293 322 - -
Seca9g05803 545 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 45 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca9g05803 545 MobiDBLite consensus disorder prediction 338 394 - -
Seca9g05803 545 SMART h15plus2 43 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca9g05803 545 MobiDBLite consensus disorder prediction 1 16 - -
Seca9g05803 545 SMART AT_hook_2 372 384 IPR017956 GO:0003677
Seca9g05803 545 SMART AT_hook_2 266 278 IPR017956 GO:0003677
Seca9g05803 545 SMART AT_hook_2 233 245 IPR017956 GO:0003677
Seca9g05803 545 SMART AT_hook_2 209 221 IPR017956 GO:0003677
Seca9g05803 545 SMART AT_hook_2 146 158 IPR017956 GO:0003677
Seca9g05803 545 SMART AT_hook_2 314 326 IPR017956 GO:0003677
Seca9g05803 545 SUPERFAMILY "Winged helix" DNA-binding domain 42 121 IPR036390 -
Seca9g05803 545 MobiDBLite consensus disorder prediction 115 178 - -
Seca9g05803 545 CDD H15 49 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05803 Seca-Chr9 170175576 170181559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05803 52 118 Single Myb Histone (SMH) Gene Family AT1G49950 43.284 8.62e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05803 - - gmx:100788215 354.369