Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05794 ATGTGGATGGTAGGTTACAACAATGAAGGTGGTGAGTTCAACATGGTTGATCTTGATCATTCATTCAATGGAAGGAAACATAGGCCTCTCATGCCAACTCCAATCACTTCCCCTTCAACAATAACCCCTCCTAGCTTAAGCCACATTCATGCCAACAATTTCTTTTCACCATATCATTATCACCATCTTGCAACAGTGGCAGAACAGAACAAGAGAGAACAATGTAATGCTCAACCAGTTGTGGTGAGTTCAAGATGGAATCCAACCCCAGAGCAACTAAGAGCCTTAGAAGAGTTGTATAGAAGAGGAACAAGGACACCATCTGCAGAGCAAATTCAGCACATCACAGCACAGCTCAAAAGGTTTGGTAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCCAGAGAAAGGCAAAAACGCCGCCGCCAAATGGAATCATCATCAGCTGATCAAGGTCAACAACACCATGATTTTGATACTCCAGAGAAGAAAGATTTAGCTGCAAATAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAACACAAAGGGCAGCAAAAGCAGTGGTTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAATTACAACAAAGAAGAAACTTTTTGGAAAGGAATGCCACGTGGCATATGGTGCAGTTATCTTGTCCTCCTCCACCTGCACCTGCCACCCACCTCATAAACACCCTTCCTAATGCCTCTGCAGCCACTTGTAGTATGGCCACAGTAATAACAACAAGAATAATGGACCCAAACCTCATTAAGACCCATCAAAATCTCACCTTTTCCCTTTCACCTCATCACAGAGAAAATGGTCTTACCAGTTCCACCAGTGATGATGAAGATGAAGATGATAATATTGATATTGATAATAACTCTTTGGAATCTCAAACCCTTCAACTTTTCCCATTAAGGAGTGGTGATGGCATCAGTGATCATAACATTAACAAAGAGACAGAGATATCAGCTTCAGCATTAATGAATGCCAACTTGATCACCCCAAGTCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1128 0.4193 MWMVGYNNEGGEFNMVDLDHSFNGRKHRPLMPTPITSPSTITPPSLSHIHANNFFSPYHYHHLATVAEQNKREQCNAQPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLKRFGKIEGKNVFYWFQNHKARERQKRRRQMESSSADQGQQHHDFDTPEKKDLAANRTVFEVEQTKNWAPSTNCSTLAEESVSTQRAAKAVVAECRTDGWLQFDEGELQQRRNFLERNATWHMVQLSCPPPPAPATHLINTLPNASAATCSMATVITTRIMDPNLIKTHQNLTFSLSPHHRENGLTSSTSDDEDEDDNIDIDNNSLESQTLQLFPLRSGDGISDHNINKETEISASALMNANLITPSQFFEFLPLKN. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05794 375 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 68 370 IPR044555 GO:0003700|GO:0099402
Seca9g05794 375 SMART HOX_1 81 148 IPR001356 GO:0003677
Seca9g05794 375 MobiDBLite consensus disorder prediction 141 168 - -
Seca9g05794 375 Gene3D - 82 144 - -
Seca9g05794 375 Pfam Homeodomain 84 143 IPR001356 GO:0003677
Seca9g05794 375 CDD homeodomain 85 145 IPR001356 GO:0003677
Seca9g05794 375 MobiDBLite consensus disorder prediction 295 322 - -
Seca9g05794 375 ProSiteProfiles 'Homeobox' domain profile. 89 144 IPR001356 GO:0003677
Seca9g05794 375 FunFam WUSCHEL-related homeobox 4 83 150 - -
Seca9g05794 375 SUPERFAMILY Homeodomain-like 84 150 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05794 Seca-Chr9 169884256 169887286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05794 1 375 Wox Gene Family AT3G18010 38.806 2.45e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca9g05794 Homeodomain 1.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05794 - - gmx:100777274 466.848