Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g05789 ATGGAAGATTCAGCACCAAAGTCTCTGATGGAGAACCTGTTAGGCCTTCTGAGGGTTCGCGTCAAGCGTGGCGTCAACCTTGCCGTTCGTGATGTTCGTAGCAGCGATCCTTATGTTGTTCTCAAGATGTATAACCAGAAACTTAAGACTCGTGTGATTAAAAAGGATGTTAATCCTGAGTGGAATGAAGACCTTACGCTTTCTATCATAGATCCTAATCACTCAGTATTGCTGACTGTGTATGATCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCAGAATTTGAAATCTTTCCCTTTATTGAAGCCTTGAAGATGAATGTAACTGGCCTTCCAAATGGTACTGTGGTCAAAAGAATACAACCAAGCAGGCAAAACTGCCTAGCAGATGAGAGCTGTATCTATTATAGCAATGGCAAAGTTATCCAAGATATGATCCTTAGATTGAGAAATGTGGAATGTGGTGAAGTGGAAATCCAATTGCACTGGATTGATCTTCCTGGTTCTAAGGGATTATGA 525 0.4095 MEDSAPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVLKMYNQKLKTRVIKKDVNPEWNEDLTLSIIDPNHSVLLTVYDHDTFSKDDKMGDAEFEIFPFIEALKMNVTGLPNGTVVKRIQPSRQNCLADESCIYYSNGKVIQDMILRLRNVECGEVEIQLHWIDLPGSKGL. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g05789 174 SMART C2_3c 16 111 IPR000008 -
Seca9g05789 174 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 12 172 IPR044562 -
Seca9g05789 174 ProSiteProfiles C2 domain profile. 1 115 IPR000008 -
Seca9g05789 174 Gene3D C2 domain 11 172 IPR035892 -
Seca9g05789 174 Pfam C2 domain 15 99 IPR000008 -
Seca9g05789 174 CDD C2_ArfGAP 14 157 - -
Seca9g05789 174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 100 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g05789 Seca-Chr9 169812917 169815477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g05789 47 174 C2H2 Transcription Factor Family AT1G70790 61.538 3.65e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g05789 - - gmx:100810504 315.079